Magnesium in PDB 3bpd: Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus

The structure of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus, PDB code: 3bpd was solved by S.Eswaramoorthy, S.K.Burley, J.M.Sauder, S.Swaminathan, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	88.510, 97.360, 179.002, 90.00, 90.00, 90.00
R / Rfree (%)	24.2 / 30.5

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 27;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus (pdb code 3bpd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 27 binding sites of Magnesium where determined in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus, PDB code: 3bpd:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:31.8 occ:1.00 ND1 A:HIS75 3.0 36.1 1.0 OD1 A:ASP10 3.0 35.2 1.0 OD1 H:ASP43 3.2 49.8 1.0 OE2 H:GLU41 3.2 52.4 1.0 OD2 A:ASP10 3.4 35.6 1.0 ND2 H:ASN48 3.4 43.8 1.0 CG A:ASP10 3.5 33.6 1.0 CG H:ASP43 3.8 49.2 1.0 OD2 H:ASP43 3.8 49.8 1.0 OD1 A:ASN48 3.8 36.2 1.0 CG A:HIS75 3.9 34.9 1.0 CE1 A:HIS75 3.9 35.4 1.0 CB A:HIS75 3.9 33.1 1.0 CD H:GLU41 4.0 52.0 1.0 OE1 H:GLU41 4.2 54.1 1.0 CG H:ASN48 4.7 42.6 1.0 CG A:ASN48 4.7 34.6 1.0 MG H:MG101 4.9 36.0 1.0 CB A:ASP10 5.0 30.3 1.0

Magnesium binding site 2 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg114 b:29.6 occ:1.00 OE2 A:GLU41 2.2 47.1 1.0 OD2 A:ASP43 2.3 37.1 1.0 OD1 H:ASP10 2.4 36.1 1.0 OG H:SER76 2.7 36.2 1.0 CD A:GLU41 2.8 46.0 1.0 OE1 A:GLU41 3.3 46.6 1.0 CG A:ASP43 3.3 37.7 1.0 CG H:ASP10 3.4 37.5 1.0 CB H:SER76 3.5 35.5 1.0 CB H:ASP10 3.7 37.5 1.0 CG A:GLU41 3.7 44.6 1.0 OD1 A:ASP43 3.7 37.0 1.0 OD1 H:ASP78 4.0 33.5 1.0 MG A:MG115 4.1 33.7 1.0 OD2 H:ASP78 4.4 37.7 1.0 OD2 H:ASP10 4.5 36.2 1.0 CG H:ASP78 4.6 34.2 1.0 CB A:ASP43 4.6 39.2 1.0 CA H:SER76 4.8 35.2 1.0 N H:SER76 4.9 35.3 1.0 O H:HIS75 5.0 35.0 1.0 CB H:HIS75 5.0 38.5 1.0 C H:HIS75 5.0 36.2 1.0

Magnesium binding site 3 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg115 b:33.7 occ:1.00 OD1 H:ASP10 2.5 36.1 1.0 OD1 A:ASP43 2.8 37.0 1.0 OE2 A:GLU41 3.0 47.1 1.0 CG H:ASP10 3.2 37.5 1.0 OD2 H:ASP10 3.3 36.2 1.0 ND2 A:ASN48 3.3 36.2 1.0 CD2 H:HIS75 3.5 40.5 1.0 CG A:ASP43 3.7 37.7 1.0 OD1 H:ASN48 3.7 44.3 1.0 OD2 A:ASP43 4.0 37.1 1.0 CB H:HIS75 4.0 38.5 1.0 CG H:HIS75 4.0 40.5 1.0 MG A:MG114 4.1 29.6 1.0 CD A:GLU41 4.1 46.0 1.0 CG A:ASN48 4.4 34.6 1.0 OD1 A:ASN48 4.5 36.2 1.0 CG H:ASN48 4.6 42.6 1.0 OE1 A:GLU41 4.7 46.6 1.0 NE2 H:HIS75 4.7 40.3 1.0 CB H:ASP10 4.7 37.5 1.0

Magnesium binding site 4 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg116 b:24.7 occ:1.00 OG I:SER76 2.3 39.1 1.0 OD1 I:ASP10 2.4 41.8 1.0 OE2 B:GLU41 2.6 50.8 1.0 OD2 B:ASP43 2.7 37.8 1.0 CD B:GLU41 3.0 49.0 1.0 CG I:ASP10 3.3 40.4 1.0 OE1 B:GLU41 3.4 50.3 1.0 CB I:SER76 3.5 36.1 1.0 CB I:ASP10 3.5 36.9 1.0 CG B:ASP43 3.7 38.2 1.0 OD1 I:ASP78 3.8 31.6 1.0 CG B:GLU41 3.9 45.0 1.0 MG B:MG117 3.9 45.4 1.0 OD1 B:ASP43 4.1 38.1 1.0 OD2 I:ASP78 4.4 35.7 1.0 OD2 I:ASP10 4.4 40.3 1.0 CG I:ASP78 4.5 33.0 1.0 O B:ILE42 4.6 35.8 1.0 CA I:SER76 4.7 35.4 1.0 NZ I:LYS50 4.7 53.4 1.0 N I:SER76 4.8 37.0 1.0

Magnesium binding site 5 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg117 b:45.4 occ:1.00 OE2 B:GLU41 2.1 50.8 1.0 OD1 I:ASP10 2.7 41.8 1.0 OD1 B:ASP43 2.7 38.1 1.0 ND2 B:ASN48 3.2 39.4 1.0 CD B:GLU41 3.3 49.0 1.0 CG I:ASP10 3.6 40.4 1.0 CG B:ASP43 3.6 38.2 1.0 OD2 I:ASP10 3.8 40.3 1.0 ND1 I:HIS75 3.8 42.9 1.0 OD2 B:ASP43 3.8 37.8 1.0 MG B:MG116 3.9 24.7 1.0 OE1 B:GLU41 3.9 50.3 1.0 OD1 I:ASN48 4.1 46.7 1.0 CG B:GLU41 4.3 45.0 1.0 CB I:HIS75 4.4 40.2 1.0 CG B:ASN48 4.5 38.8 1.0 CG I:HIS75 4.6 41.6 1.0 CE1 I:HIS75 4.8 43.1 1.0 CB B:GLU41 4.9 40.4 1.0 CG I:ASN48 4.9 43.9 1.0 CB I:ASP10 5.0 36.9 1.0

Magnesium binding site 6 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg104 b:26.3 occ:1.00 OD1 C:ASP10 2.3 28.4 1.0 OD2 J:ASP43 2.3 37.3 1.0 OE2 J:GLU41 2.4 47.1 1.0 OG C:SER76 2.4 25.5 1.0 CD J:GLU41 3.0 45.5 1.0 CG C:ASP10 3.2 30.1 1.0 CB C:SER76 3.3 23.4 1.0 CB C:ASP10 3.4 29.1 1.0 CG J:ASP43 3.5 39.2 1.0 OE1 J:GLU41 3.5 47.1 1.0 MG C:MG105 3.6 33.7 1.0 OD1 C:ASP78 3.8 25.8 1.0 OD1 J:ASP43 3.9 39.6 1.0 CG J:GLU41 4.1 43.0 1.0 OD2 C:ASP78 4.3 30.8 1.0 OD2 C:ASP10 4.3 31.5 1.0 CA C:SER76 4.4 25.7 1.0 CG C:ASP78 4.5 26.8 1.0 N C:SER76 4.5 26.5 1.0 CB J:ASP43 4.7 38.8 1.0 O J:ILE42 4.8 37.3 1.0 C C:HIS75 4.8 27.2 1.0 CB C:HIS75 4.9 32.1 1.0 CA C:ASP10 4.9 26.8 1.0 O C:SER76 5.0 25.0 1.0

Magnesium binding site 7 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg105 b:33.7 occ:1.00 OD1 C:ASP10 2.3 28.4 1.0 OE2 J:GLU41 2.5 47.1 1.0 OD1 J:ASP43 2.7 39.6 1.0 CG C:ASP10 3.1 30.1 1.0 OD2 C:ASP10 3.2 31.5 1.0 CG J:ASP43 3.5 39.2 1.0 OD2 J:ASP43 3.5 37.3 1.0 CD J:GLU41 3.5 45.5 1.0 MG C:MG104 3.6 26.3 1.0 ND2 C:ASN48 3.8 49.7 1.0 ND1 C:HIS75 3.9 37.9 1.0 OE1 J:GLU41 4.0 47.1 1.0 CB C:HIS75 4.2 32.1 1.0 CB C:ASP10 4.5 29.1 1.0 CG C:HIS75 4.5 36.2 1.0 OD1 C:ASN48 4.6 48.8 1.0 CG C:ASN48 4.6 45.8 1.0 CG J:GLU41 4.7 43.0 1.0 OD1 J:ASN48 4.7 35.6 1.0 CB J:ASP43 4.9 38.8 1.0

Magnesium binding site 8 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg118 b:24.5 occ:1.00 OD1 J:ASP10 2.4 25.3 1.0 OE2 C:GLU41 2.4 48.8 1.0 OD2 C:ASP43 2.4 40.3 1.0 OG J:SER76 2.5 29.9 1.0 CD C:GLU41 3.1 47.0 1.0 CG J:ASP10 3.2 24.7 1.0 OE1 C:GLU41 3.4 48.4 1.0 CG C:ASP43 3.4 40.1 1.0 CB J:ASP10 3.5 25.4 1.0 CB J:SER76 3.6 28.1 1.0 OD1 C:ASP43 3.7 40.8 1.0 OD1 J:ASP78 3.8 31.2 1.0 MG J:MG119 4.1 40.7 1.0 CG C:GLU41 4.2 44.6 1.0 OD2 J:ASP10 4.2 25.3 1.0 OD2 J:ASP78 4.4 32.7 1.0 CG J:ASP78 4.5 31.0 1.0 CB J:HIS75 4.6 28.7 1.0 N J:SER76 4.6 26.2 1.0 CA J:SER76 4.7 26.9 1.0 CB C:ASP43 4.8 39.9 1.0 NZ J:LYS50 4.8 44.8 1.0 C J:HIS75 4.9 26.9 1.0

Magnesium binding site 9 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg120 b:21.1 occ:1.00 OG K:SER76 2.5 17.1 1.0 OD1 K:ASP10 2.6 31.0 1.0 OD2 D:ASP43 2.6 33.6 1.0 OE2 D:GLU41 2.7 35.5 1.0 CD D:GLU41 2.9 35.4 1.0 OE1 D:GLU41 3.3 36.5 1.0 CB K:SER76 3.4 21.2 1.0 CG K:ASP10 3.6 30.4 1.0 CG D:ASP43 3.7 31.0 1.0 OD1 K:ASP78 3.7 32.6 1.0 CG D:GLU41 3.8 33.1 1.0 CB K:ASP10 3.9 29.8 1.0 OD1 D:ASP43 4.0 35.4 1.0 MG K:MG121 4.1 31.2 1.0 OD2 K:ASP78 4.4 35.3 1.0 CG K:ASP78 4.5 31.8 1.0 OD2 K:ASP10 4.7 32.1 1.0 CA K:SER76 4.7 21.8 1.0 O D:ILE42 4.7 26.1 1.0 N K:SER76 4.9 22.0 1.0 CB D:ASP43 5.0 29.5 1.0

Magnesium binding site 10 out of 27 in the Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg122 b:30.8 occ:1.00 OD1 L:ASP10 2.1 32.3 1.0 OD2 E:ASP43 2.3 40.3 1.0 OG L:SER76 2.5 25.6 1.0 OE2 E:GLU41 2.7 39.7 1.0 CG L:ASP10 3.2 29.6 1.0 CD E:GLU41 3.2 39.8 1.0 CB L:SER76 3.3 23.3 1.0 CG E:ASP43 3.3 40.1 1.0 CB L:ASP10 3.6 27.1 1.0 OE1 E:GLU41 3.6 40.1 1.0 OD1 E:ASP43 3.7 39.7 1.0 MG L:MG123 4.0 37.5 1.0 OD1 L:ASP78 4.0 23.2 1.0 CG E:GLU41 4.0 37.8 1.0 OD2 L:ASP10 4.3 30.7 1.0 CA L:SER76 4.5 22.3 1.0 CB E:ASP43 4.6 39.8 1.0 OD2 L:ASP78 4.6 28.1 1.0 O E:ILE42 4.6 33.8 1.0 N L:SER76 4.6 23.7 1.0 CG L:ASP78 4.7 23.1 1.0 CB L:HIS75 4.8 24.6 1.0 C L:HIS75 4.8 24.5 1.0 O L:HIS75 5.0 26.7 1.0

S.Eswaramoorthy, S.K.Burley, J.M.Sauder, S.Swaminathan. Crystal Structure of An Uncharacterized Protein (O28723_ARCFU) From Archaeoglobus Fulgidus. To Be Published.