Magnesium in PDB 3i8b: The Crystal Structure of Xylulose Kinase From Bifidobacterium Adolescentis

The structure of The Crystal Structure of Xylulose Kinase From Bifidobacterium Adolescentis, PDB code: 3i8b was solved by Z.Zhang, S.K.Burley, S.Swaminathan, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.30 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	96.732, 61.918, 94.606, 90.00, 93.04, 90.00
R / Rfree (%)	18 / 22.6

The binding sites of Magnesium atom in the The Crystal Structure of Xylulose Kinase From Bifidobacterium Adolescentis (pdb code 3i8b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of Xylulose Kinase From Bifidobacterium Adolescentis, PDB code: 3i8b:

Magnesium binding site 1 out of 1 in the The Crystal Structure of Xylulose Kinase From Bifidobacterium Adolescentis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Xylulose Kinase From Bifidobacterium Adolescentis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg515 b:27.7 occ:1.00 O A:GLU189 2.3 12.2 1.0 O A:HOH569 2.3 14.4 1.0 OG1 A:THR240 2.5 15.8 1.0 O A:LEU191 2.6 9.6 1.0 O A:HOH568 2.6 19.3 1.0 O A:HOH774 2.9 22.7 1.0 C A:GLU189 3.3 12.9 1.0 CB A:THR240 3.6 10.7 1.0 C A:LEU191 3.7 9.3 1.0 N A:THR240 3.8 8.3 1.0 N A:LEU191 3.9 10.1 1.0 OE1 A:GLU189 3.9 28.6 1.0 C A:ALA190 4.0 13.4 1.0 CA A:GLU189 4.0 15.1 1.0 N A:ALA190 4.3 12.1 1.0 CA A:THR240 4.3 10.8 1.0 CA A:LEU191 4.3 8.5 1.0 CA A:ALA190 4.4 11.5 1.0 O A:HOH871 4.4 23.3 1.0 O A:ALA190 4.4 10.7 1.0 CB A:GLU189 4.6 19.5 1.0 O A:HOH566 4.6 10.0 1.0 N A:PHE192 4.7 6.6 1.0 CG2 A:THR240 4.8 12.6 1.0 C A:PRO239 4.8 9.4 1.0 O A:LEU238 4.8 10.6 1.0 CB A:LEU191 4.9 9.9 1.0 CA A:PRO239 4.9 10.0 1.0 CA A:PHE192 5.0 8.4 1.0 O A:LEU188 5.0 7.9 1.0

Z.Zhang, S.K.Burley, S.Swaminathan. The Crystal Structure of Xylulose Kinase From Bifidobacterium Adolescentis To Be Published.