Atomistry » Magnesium » PDB 3igi-3is5 » 3iqw
Atomistry »
  Magnesium »
    PDB 3igi-3is5 »
      3iqw »

Magnesium in PDB 3iqw: Amppnp Complex of C. Therm. GET3

Protein crystallography data

The structure of Amppnp Complex of C. Therm. GET3, PDB code: 3iqw was solved by G.Bozkurt, K.Wild, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.86 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.570, 105.730, 136.930, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 27.1

Other elements in 3iqw:

The structure of Amppnp Complex of C. Therm. GET3 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Amppnp Complex of C. Therm. GET3 (pdb code 3iqw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Amppnp Complex of C. Therm. GET3, PDB code: 3iqw:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3iqw

Go back to Magnesium Binding Sites List in 3iqw
Magnesium binding site 1 out of 2 in the Amppnp Complex of C. Therm. GET3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Amppnp Complex of C. Therm. GET3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg346

b:9.4
occ:1.00
O A:HOH348 2.0 21.5 1.0
O2B A:ANP1 2.2 14.2 1.0
O2G A:ANP1 2.3 18.2 1.0
OG1 A:THR41 2.3 22.0 1.0
O A:HOH347 2.7 18.6 1.0
O A:HOH2 2.8 13.7 1.0
CB A:THR41 3.2 20.8 1.0
PB A:ANP1 3.4 13.9 1.0
PG A:ANP1 3.6 16.9 1.0
N A:THR41 3.6 18.9 1.0
N3B A:ANP1 3.7 15.8 1.0
OD1 A:ASN68 3.8 35.4 1.0
OD1 A:ASP156 3.9 21.4 1.0
CA A:THR41 3.9 18.7 1.0
O2A A:ANP1 4.1 12.9 1.0
CB A:ASN68 4.3 32.0 1.0
O1B A:ANP1 4.4 12.9 1.0
CG2 A:THR41 4.5 20.8 1.0
OD2 A:ASP156 4.5 19.7 1.0
O1G A:ANP1 4.5 16.3 1.0
CG A:ASN68 4.5 35.2 1.0
O3A A:ANP1 4.5 12.1 1.0
PA A:ANP1 4.5 13.0 1.0
O1A A:ANP1 4.6 12.2 1.0
O3G A:ANP1 4.6 17.5 1.0
CG A:ASP156 4.6 20.1 1.0
CB A:LYS40 4.7 19.2 1.0
C A:LYS40 4.7 17.3 1.0
NZ B:LYS35 4.8 48.6 1.0
CE A:LYS40 4.9 23.3 1.0

Magnesium binding site 2 out of 2 in 3iqw

Go back to Magnesium Binding Sites List in 3iqw
Magnesium binding site 2 out of 2 in the Amppnp Complex of C. Therm. GET3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Amppnp Complex of C. Therm. GET3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2

b:36.2
occ:1.00
O2B B:ANP1 2.1 27.0 1.0
O2G B:ANP1 2.3 25.6 1.0
OG1 B:THR41 2.4 38.0 1.0
O B:HOH4 2.5 18.8 1.0
O B:HOH5 2.8 30.1 1.0
CB B:THR41 3.2 36.8 1.0
PB B:ANP1 3.3 26.1 1.0
N B:THR41 3.4 34.2 1.0
PG B:ANP1 3.5 25.4 1.0
N3B B:ANP1 3.7 25.8 1.0
CA B:THR41 3.8 35.5 1.0
OD1 B:ASP156 3.9 40.8 1.0
O1B B:ANP1 4.0 24.2 1.0
O3G B:ANP1 4.1 24.6 1.0
OD2 B:ASP156 4.2 38.2 1.0
CB B:LYS40 4.2 33.8 1.0
OD1 B:ASN68 4.3 45.7 1.0
O2A B:ANP1 4.4 26.6 1.0
CG B:ASP156 4.5 39.7 1.0
C B:LYS40 4.5 33.5 1.0
CG2 B:THR41 4.5 38.6 1.0
O1A B:ANP1 4.6 27.1 1.0
O3A B:ANP1 4.7 26.4 1.0
CE B:LYS40 4.7 35.6 1.0
O1G B:ANP1 4.7 24.7 1.0
CA B:LYS40 4.8 32.9 1.0
CB B:ASN68 4.8 46.4 1.0
PA B:ANP1 4.8 27.3 1.0
N B:LYS40 4.8 32.4 1.0
CG B:ASN68 5.0 47.1 1.0

Reference:

G.Bozkurt, G.Stjepanovic, F.Vilardi, S.Amlacher, K.Wild, G.Bange, V.Favaloro, K.Rippe, E.Hurt, B.Dobberstein, I.Sinning. Structural Insights Into Tail-Anchored Protein Binding and Membrane Insertion By GET3. Proc.Natl.Acad.Sci.Usa V. 106 21131 2009.
ISSN: ISSN 0027-8424
PubMed: 19948960
DOI: 10.1073/PNAS.0910223106
Page generated: Wed Aug 14 16:14:44 2024

Last articles

Sr in 1SFC
Sr in 1OQ7
Sr in 1U3E
Sr in 1VC0
Sr in 1F1T
Sr in 1J8G
Sr in 1NVY
Sr in 1TJM
Sr in 1NUV
Sr in 1M6G
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy