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Magnesium in PDB 3jbk: Cryo-Em Reconstruction of the Metavinculin-Actin Interface

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Reconstruction of the Metavinculin-Actin Interface (pdb code 3jbk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Reconstruction of the Metavinculin-Actin Interface, PDB code: 3jbk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3jbk

Go back to Magnesium Binding Sites List in 3jbk
Magnesium binding site 1 out of 2 in the Cryo-Em Reconstruction of the Metavinculin-Actin Interface


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Reconstruction of the Metavinculin-Actin Interface within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:0.0
occ:1.00
O3B A:ADP402 1.8 0.0 1.0
O2B A:ADP402 1.8 0.0 1.0
OD2 A:ASP154 1.8 0.0 1.0
OE1 A:GLN137 1.9 0.0 1.0
OD1 A:ASP154 1.9 0.0 1.0
CG A:ASP154 2.2 0.0 1.0
PB A:ADP402 2.5 0.0 1.0
CD A:GLN137 2.9 0.0 1.0
NE2 A:GLN137 3.4 0.0 1.0
O1B A:ADP402 3.4 0.0 1.0
O3A A:ADP402 3.6 0.0 1.0
CB A:ASP154 3.8 0.0 1.0
OG A:SER14 4.1 0.0 1.0
CG A:GLN137 4.1 0.0 1.0
CB A:GLN137 4.1 0.0 1.0
C A:ASP154 4.5 0.0 1.0
CA A:ASP154 4.5 0.0 1.0
N A:SER155 4.6 0.0 1.0
O2A A:ADP402 4.6 0.0 1.0
PA A:ADP402 4.6 0.0 1.0
CG2 A:VAL339 4.7 0.0 1.0
N A:GLY156 4.7 0.0 1.0
O A:ASP154 4.9 0.0 1.0
C A:SER155 4.9 0.0 1.0

Magnesium binding site 2 out of 2 in 3jbk

Go back to Magnesium Binding Sites List in 3jbk
Magnesium binding site 2 out of 2 in the Cryo-Em Reconstruction of the Metavinculin-Actin Interface


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Reconstruction of the Metavinculin-Actin Interface within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:0.0
occ:1.00
O3B B:ADP402 1.8 0.0 1.0
O2B B:ADP402 1.8 0.0 1.0
OD2 B:ASP154 1.9 0.0 1.0
OD1 B:ASP154 1.9 0.0 1.0
OE1 B:GLN137 1.9 0.0 1.0
CG B:ASP154 2.2 0.0 1.0
PB B:ADP402 2.5 0.0 1.0
CD B:GLN137 3.0 0.0 1.0
O1B B:ADP402 3.5 0.0 1.0
O3A B:ADP402 3.6 0.0 1.0
NE2 B:GLN137 3.6 0.0 1.0
CB B:ASP154 3.8 0.0 1.0
OG B:SER14 4.1 0.0 1.0
CG B:GLN137 4.2 0.0 1.0
CB B:GLN137 4.3 0.0 1.0
C B:ASP154 4.5 0.0 1.0
CA B:ASP154 4.5 0.0 1.0
O2A B:ADP402 4.5 0.0 1.0
PA B:ADP402 4.6 0.0 1.0
N B:SER155 4.6 0.0 1.0
N B:GLY156 4.8 0.0 1.0
CG2 B:VAL339 4.8 0.0 1.0
O B:ASP154 4.9 0.0 1.0
C B:SER155 4.9 0.0 1.0

Reference:

L.Y.Kim, P.M.Thompson, H.T.Lee, M.Pershad, S.L.Campbell, G.M.Alushin. The Structural Basis of Actin Organization By Vinculin and Metavinculin. J.Mol.Biol. V. 428 10 2016.
ISSN: ISSN 0022-2836
PubMed: 26493222
DOI: 10.1016/J.JMB.2015.09.031
Page generated: Sun Aug 10 23:16:37 2025

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