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Magnesium in PDB 3l23: Crystal Structure of Sugar Phosphate Isomerase/Epimerase (YP_001303399.1) From Parabacteroides Distasonis Atcc 8503 at 1.70 A Resolution

Protein crystallography data

The structure of Crystal Structure of Sugar Phosphate Isomerase/Epimerase (YP_001303399.1) From Parabacteroides Distasonis Atcc 8503 at 1.70 A Resolution, PDB code: 3l23 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.32 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.657, 56.634, 78.188, 90.00, 102.98, 90.00
R / Rfree (%) 14.8 / 16.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Sugar Phosphate Isomerase/Epimerase (YP_001303399.1) From Parabacteroides Distasonis Atcc 8503 at 1.70 A Resolution (pdb code 3l23). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Sugar Phosphate Isomerase/Epimerase (YP_001303399.1) From Parabacteroides Distasonis Atcc 8503 at 1.70 A Resolution, PDB code: 3l23:

Magnesium binding site 1 out of 1 in 3l23

Go back to Magnesium Binding Sites List in 3l23
Magnesium binding site 1 out of 1 in the Crystal Structure of Sugar Phosphate Isomerase/Epimerase (YP_001303399.1) From Parabacteroides Distasonis Atcc 8503 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Sugar Phosphate Isomerase/Epimerase (YP_001303399.1) From Parabacteroides Distasonis Atcc 8503 at 1.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1

b:16.5
occ:1.00
OD2 A:ASP247 2.0 32.1 1.0
OE1 A:GLU306 2.0 35.7 1.0
O A:HOH14 2.1 20.4 1.0
NE2 A:HIS196 2.2 29.4 1.0
ND1 A:HIS273 2.3 30.6 1.0
O A:HOH15 2.4 21.6 1.0
CD A:GLU306 3.0 41.7 1.0
CE1 A:HIS273 3.1 32.5 1.0
CG A:ASP247 3.2 31.4 1.0
CE1 A:HIS196 3.2 33.6 1.0
CD2 A:HIS196 3.2 30.9 1.0
CG A:HIS273 3.4 29.1 1.0
OE2 A:GLU306 3.4 49.5 1.0
CB A:ASP247 3.8 30.5 1.0
CB A:HIS273 3.8 30.0 1.0
OD1 A:ASP247 4.2 30.6 1.0
NE2 A:HIS273 4.3 31.9 1.0
ND1 A:HIS196 4.3 30.3 1.0
CG A:GLU306 4.3 34.9 1.0
CG A:HIS196 4.4 29.2 1.0
CD2 A:HIS273 4.4 32.1 1.0
CD1 A:TRP250 4.5 32.8 1.0
CB A:GLU306 4.6 32.3 1.0
CD A:LYS275 4.8 32.5 1.0
NE1 A:TRP250 4.9 30.6 1.0
O A:HOH470 4.9 44.0 1.0
CA A:ASP247 4.9 31.0 1.0
O A:ASN197 5.0 30.8 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Aug 14 18:21:19 2024

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