Magnesium in PDB 3nma: Mutant P169S of Foot-and-Mouth Disease Virus Rna Dependent Rna- Polymerase

The structure of Mutant P169S of Foot-and-Mouth Disease Virus Rna Dependent Rna- Polymerase, PDB code: 3nma was solved by R.Agudo, C.Ferrer-Orta, A.Arias, R.Perez-Luque, N.Verdaguer, E.Domingo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.42 / 2.60
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	93.834, 93.834, 121.687, 90.00, 90.00, 90.00
R / Rfree (%)	22.1 / 26

The binding sites of Magnesium atom in the Mutant P169S of Foot-and-Mouth Disease Virus Rna Dependent Rna- Polymerase (pdb code 3nma). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mutant P169S of Foot-and-Mouth Disease Virus Rna Dependent Rna- Polymerase, PDB code: 3nma:

Magnesium binding site 1 out of 1 in the Mutant P169S of Foot-and-Mouth Disease Virus Rna Dependent Rna- Polymerase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mutant P169S of Foot-and-Mouth Disease Virus Rna Dependent Rna- Polymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1055 b:54.5 occ:1.00 OD2 A:ASP238 2.6 55.0 1.0 OD1 A:ASP339 3.0 51.8 1.0 O A:THR384 3.1 53.4 1.0 OD2 A:ASP240 3.4 55.8 1.0 CG A:ASP238 3.6 54.2 1.0 OD1 A:ASP238 3.9 54.9 1.0 O A:VAL239 3.9 54.1 1.0 CG A:ASP339 4.2 51.4 1.0 C A:THR384 4.2 53.2 1.0 O A:ILE340 4.2 51.2 1.0 CB A:ALA367 4.5 60.5 1.0 CG A:ASP240 4.6 55.0 1.0 OD2 A:ASP339 4.7 52.4 1.0 N A:ILE340 4.7 51.0 1.0 C A:VAL239 4.7 54.0 1.0 CG2 A:THR384 4.7 53.4 1.0 O A:HOH544 4.9 63.8 1.0 CB A:ASP238 4.9 53.7 1.0 N A:VAL239 4.9 53.7 1.0 CB A:THR384 4.9 53.5 1.0

R.Agudo, C.Ferrer-Orta, A.Arias, I.De La Higuera, C.Perales, R.Perez-Luque, N.Verdaguer, E.Domingo. A Multi-Step Process of Viral Adaptation to A Mutagenic Nucleoside Analogue By Modulation of Transition Types Leads to Extinction-Escape. Plos Pathog. V. 6 01072 2010.
ISSN: ISSN 1553-7366
PubMed: 20865120
DOI: 10.1371/JOURNAL.PPAT.1001072