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Magnesium in PDB 3zl6: Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833.

Enzymatic activity of Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833.

All present enzymatic activity of Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833.:
2.5.1.10;

Protein crystallography data

The structure of Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833., PDB code: 3zl6 was solved by J.W.Schmidberger, R.Schnell, G.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.35 / 1.85
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 85.160, 98.840, 131.550, 90.00, 90.00, 90.00
R / Rfree (%) 17.545 / 22.222

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833. (pdb code 3zl6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833., PDB code: 3zl6:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3zl6

Go back to Magnesium Binding Sites List in 3zl6
Magnesium binding site 1 out of 3 in the Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1296

b:37.5
occ:1.00
 O A:HOH2231 1.8 29.5 1.0
O A:HOH2201 1.9 30.9 1.0
OD1 A:ASP223 2.0 19.8 1.0
O A:HOH2194 2.1 32.2 1.0
O A:HOH2200 2.2 31.3 1.0
O A:HOH2165 2.5 23.7 1.0
CG A:ASP223 3.0 20.5 1.0
OD2 A:ASP223 3.3 22.2 1.0
O A:HOH2199 4.0 37.7 1.0
O A:HOH2204 4.2 34.3 1.0
OE1 A:GLN219 4.3 19.1 1.0
O A:GLN219 4.3 15.2 1.0
CB A:ASP223 4.3 20.2 1.0
O A:HOH2195 4.4 27.9 1.0
CE1 A:HIS177 4.6 17.2 1.0
NE2 A:HIS177 4.6 17.2 1.0
CA A:ASP223 4.6 22.4 1.0
N A:ASP223 4.7 19.5 1.0

Magnesium binding site 2 out of 3 in 3zl6

Go back to Magnesium Binding Sites List in 3zl6
Magnesium binding site 2 out of 3 in the Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1294

b:47.6
occ:1.00
 OD1 B:ASP223 1.9 24.2 1.0
O B:HOH2171 2.0 41.6 1.0
O B:HOH2174 2.1 37.1 1.0
O B:HOH2170 2.3 29.7 1.0
O B:HOH2172 2.3 39.4 1.0
O B:HOH2145 2.5 26.3 1.0
CG B:ASP223 2.9 22.6 1.0
OD2 B:ASP223 3.3 19.8 1.0
OE1 B:GLN219 4.1 28.9 1.0
CB B:ASP223 4.2 23.8 1.0
O B:GLN219 4.4 22.0 1.0
CA B:ASP223 4.5 24.4 1.0
N B:ASP223 4.6 24.6 1.0
CE1 B:HIS177 4.8 20.4 1.0
NE2 B:HIS177 4.8 22.4 1.0

Magnesium binding site 3 out of 3 in 3zl6

Go back to Magnesium Binding Sites List in 3zl6
Magnesium binding site 3 out of 3 in the Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Native Structure of Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa PAO1, with Bound Fragment KM10833. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1295

b:33.4
occ:1.00
 OD2 B:ASP91 1.9 43.0 1.0
O B:HOH2100 2.0 34.8 1.0
O B:HOH2098 2.1 30.3 1.0
O B:HOH2090 2.2 25.3 1.0
O B:HOH2094 2.2 47.6 1.0
OD2 B:ASP89 2.2 37.0 1.0
CG B:ASP91 3.1 38.5 1.0
CG B:ASP89 3.3 32.9 1.0
OD1 B:ASP91 3.7 40.0 1.0
CB B:ASP89 3.9 23.6 1.0
CB B:ASP91 4.1 28.3 1.0
OD1 B:ASP84 4.1 17.1 1.0
OD2 B:ASP83 4.2 22.9 1.0
NH2 B:ARG94 4.3 36.1 1.0
OD1 B:ASP89 4.4 42.9 1.0
O B:HOH2092 4.8 35.7 1.0
O B:HOH2105 5.0 32.9 1.0

Reference:

J.W.Schmidberger, R.Schnell, G.Schneider. Native Structure of Farnesyl Pyrophosphate Synthase To Be Published.
Page generated: Mon Dec 14 09:03:53 2020

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