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Magnesium in PDB 3zu6: The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Orthophosphate Reaction Products.

Enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Orthophosphate Reaction Products.

All present enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Orthophosphate Reaction Products.:
3.1.3.70;

Protein crystallography data

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Orthophosphate Reaction Products., PDB code: 3zu6 was solved by S.Goncalves, N.Borges, A.M.Esteves, H.Santos, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.852 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.930, 70.530, 92.630, 90.00, 95.70, 90.00
R / Rfree (%) 18.23 / 23.76

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Orthophosphate Reaction Products. (pdb code 3zu6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Orthophosphate Reaction Products., PDB code: 3zu6:

Magnesium binding site 1 out of 1 in 3zu6

Go back to Magnesium Binding Sites List in 3zu6
Magnesium binding site 1 out of 1 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Orthophosphate Reaction Products.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Orthophosphate Reaction Products. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1253

b:38.9
occ:1.00
 O2 B:PO41254 1.9 69.3 1.0
O B:ASP8 2.3 35.5 1.0
OD1 B:ASP202 2.4 40.5 1.0
O B:HOH2006 2.4 45.6 1.0
O B:HOH2004 2.4 44.3 1.0
OD1 B:ASP6 2.6 64.0 1.0
OD2 B:ASP6 2.7 63.4 1.0
CG B:ASP6 2.9 60.0 1.0
P B:PO41254 3.4 53.5 1.0
C B:ASP8 3.4 46.8 1.0
CG B:ASP202 3.5 62.3 1.0
OG B:SER203 3.7 57.7 1.0
O3 B:PO41254 3.8 48.0 1.0
OD2 B:ASP202 3.9 79.0 1.0
CB B:ASP8 3.9 44.5 1.0
CA B:ASP8 4.0 35.6 1.0
O B:GLY165 4.0 53.9 1.0
N B:ASP8 4.1 31.6 1.0
O4 B:PO41254 4.1 51.0 1.0
OD2 B:ASP206 4.3 42.5 1.0
CB B:ASP6 4.3 45.3 1.0
O1 B:PO41254 4.4 81.5 1.0
N B:GLY9 4.5 45.7 1.0
O13 B:2M81255 4.6 55.3 1.0
OG1 B:THR10 4.7 57.0 1.0
CB B:ASP202 4.8 41.8 1.0
CA B:GLY9 4.8 51.5 1.0
C23 B:2M81255 4.9 60.2 1.0
N B:SER203 4.9 36.0 1.0
CB B:SER203 4.9 47.9 1.0
C B:LEU7 4.9 41.9 1.0
OD1 B:ASN205 4.9 43.4 1.0
N B:ASP202 5.0 33.1 1.0
N B:THR10 5.0 44.8 1.0

Reference:

S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias. The Three-Dimensional Structure of Mannosyl-3- Phosphoglycerate Phosphatase From Thermus Thermophilus HB27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry V. 50 9551 2011.
ISSN: ISSN 0006-2960
PubMed: 21961705
DOI: 10.1021/BI201171H
Page generated: Mon Aug 11 05:21:21 2025

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