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Magnesium in PDB 4aaq: Atp-Triggered Molecular Mechanics of the Chaperonin Groel

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel (pdb code 4aaq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel, PDB code: 4aaq:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 4aaq

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Magnesium binding site 1 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1527

b:0.0
occ:0.00
O3G A:ATP1525 1.8 0.0 1.0
O1B A:ATP1525 1.8 0.0 1.0
OD1 A:ASP87 1.8 0.0 1.0
O2A A:ATP1525 1.8 0.0 1.0
OD2 A:ASP87 1.9 0.0 1.0
CG A:ASP87 2.2 0.0 1.0
PB A:ATP1525 2.9 0.0 1.0
PG A:ATP1525 3.0 0.0 1.0
PA A:ATP1525 3.1 0.0 1.0
O3B A:ATP1525 3.4 0.0 1.0
O3A A:ATP1525 3.5 0.0 1.0
O2G A:ATP1525 3.6 0.0 1.0
CB A:ASP87 3.6 0.0 1.0
H5'2 A:ATP1525 3.7 0.0 1.0
N A:GLY88 3.8 0.0 1.0
O1A A:ATP1525 4.0 0.0 1.0
O5' A:ATP1525 4.2 0.0 1.0
O1G A:ATP1525 4.2 0.0 1.0
CA A:ASP87 4.2 0.0 1.0
O2B A:ATP1525 4.3 0.0 1.0
C5' A:ATP1525 4.4 0.0 1.0
C A:ASP87 4.6 0.0 1.0
H5'1 A:ATP1525 4.7 0.0 1.0
CA A:GLY88 4.7 0.0 1.0
P A:PO41526 5.0 0.0 1.0

Magnesium binding site 2 out of 7 in 4aaq

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Magnesium binding site 2 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1527

b:0.0
occ:0.00
O3G B:ATP1525 1.8 0.0 1.0
O1B B:ATP1525 1.8 0.0 1.0
OD1 B:ASP87 1.8 0.0 1.0
O2A B:ATP1525 1.8 0.0 1.0
OD2 B:ASP87 1.9 0.0 1.0
CG B:ASP87 2.2 0.0 1.0
PB B:ATP1525 2.9 0.0 1.0
PG B:ATP1525 3.0 0.0 1.0
PA B:ATP1525 3.1 0.0 1.0
O3B B:ATP1525 3.4 0.0 1.0
O3A B:ATP1525 3.5 0.0 1.0
O2G B:ATP1525 3.6 0.0 1.0
CB B:ASP87 3.6 0.0 1.0
H5'2 B:ATP1525 3.7 0.0 1.0
N B:GLY88 3.8 0.0 1.0
O1A B:ATP1525 4.0 0.0 1.0
O5' B:ATP1525 4.2 0.0 1.0
O1G B:ATP1525 4.2 0.0 1.0
CA B:ASP87 4.2 0.0 1.0
O2B B:ATP1525 4.3 0.0 1.0
C5' B:ATP1525 4.4 0.0 1.0
C B:ASP87 4.6 0.0 1.0
H5'1 B:ATP1525 4.7 0.0 1.0
CA B:GLY88 4.7 0.0 1.0
P B:PO41526 5.0 0.0 1.0

Magnesium binding site 3 out of 7 in 4aaq

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Magnesium binding site 3 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1525

b:0.0
occ:0.00
O3G C:ATP1526 1.8 0.0 1.0
O1B C:ATP1526 1.8 0.0 1.0
OD1 C:ASP87 1.8 0.0 1.0
O2A C:ATP1526 1.8 0.0 1.0
OD2 C:ASP87 1.9 0.0 1.0
CG C:ASP87 2.2 0.0 1.0
PB C:ATP1526 2.9 0.0 1.0
PG C:ATP1526 3.0 0.0 1.0
PA C:ATP1526 3.1 0.0 1.0
O3B C:ATP1526 3.4 0.0 1.0
O3A C:ATP1526 3.5 0.0 1.0
O2G C:ATP1526 3.6 0.0 1.0
CB C:ASP87 3.6 0.0 1.0
H5'2 C:ATP1526 3.7 0.0 1.0
N C:GLY88 3.8 0.0 1.0
O1A C:ATP1526 4.0 0.0 1.0
O5' C:ATP1526 4.2 0.0 1.0
O1G C:ATP1526 4.2 0.0 1.0
CA C:ASP87 4.2 0.0 1.0
O2B C:ATP1526 4.3 0.0 1.0
C5' C:ATP1526 4.4 0.0 1.0
C C:ASP87 4.6 0.0 1.0
H5'1 C:ATP1526 4.7 0.0 1.0
CA C:GLY88 4.7 0.0 1.0
P C:PO41527 5.0 0.0 1.0

Magnesium binding site 4 out of 7 in 4aaq

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Magnesium binding site 4 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1527

b:0.0
occ:0.00
O3G D:ATP1525 1.8 0.0 1.0
O1B D:ATP1525 1.8 0.0 1.0
OD1 D:ASP87 1.8 0.0 1.0
O2A D:ATP1525 1.8 0.0 1.0
OD2 D:ASP87 1.9 0.0 1.0
CG D:ASP87 2.2 0.0 1.0
PB D:ATP1525 2.9 0.0 1.0
PG D:ATP1525 3.0 0.0 1.0
PA D:ATP1525 3.1 0.0 1.0
O3B D:ATP1525 3.4 0.0 1.0
O3A D:ATP1525 3.5 0.0 1.0
O2G D:ATP1525 3.6 0.0 1.0
CB D:ASP87 3.6 0.0 1.0
H5'2 D:ATP1525 3.7 0.0 1.0
N D:GLY88 3.8 0.0 1.0
O1A D:ATP1525 4.0 0.0 1.0
O5' D:ATP1525 4.2 0.0 1.0
O1G D:ATP1525 4.2 0.0 1.0
CA D:ASP87 4.2 0.0 1.0
O2B D:ATP1525 4.3 0.0 1.0
C5' D:ATP1525 4.4 0.0 1.0
C D:ASP87 4.6 0.0 1.0
H5'1 D:ATP1525 4.7 0.0 1.0
CA D:GLY88 4.7 0.0 1.0
P D:PO41526 5.0 0.0 1.0

Magnesium binding site 5 out of 7 in 4aaq

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Magnesium binding site 5 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1525

b:0.0
occ:0.00
O3G E:ATP1527 1.8 0.0 1.0
O1B E:ATP1527 1.8 0.0 1.0
OD1 E:ASP87 1.8 0.0 1.0
O2A E:ATP1527 1.8 0.0 1.0
OD2 E:ASP87 1.9 0.0 1.0
CG E:ASP87 2.2 0.0 1.0
PB E:ATP1527 2.9 0.0 1.0
PG E:ATP1527 3.0 0.0 1.0
PA E:ATP1527 3.1 0.0 1.0
O3B E:ATP1527 3.4 0.0 1.0
O3A E:ATP1527 3.5 0.0 1.0
O2G E:ATP1527 3.6 0.0 1.0
CB E:ASP87 3.6 0.0 1.0
H5'2 E:ATP1527 3.7 0.0 1.0
N E:GLY88 3.8 0.0 1.0
O1A E:ATP1527 4.0 0.0 1.0
O5' E:ATP1527 4.2 0.0 1.0
O1G E:ATP1527 4.2 0.0 1.0
CA E:ASP87 4.2 0.0 1.0
O2B E:ATP1527 4.3 0.0 1.0
C5' E:ATP1527 4.4 0.0 1.0
C E:ASP87 4.6 0.0 1.0
H5'1 E:ATP1527 4.7 0.0 1.0
CA E:GLY88 4.7 0.0 1.0
P E:PO41526 5.0 0.0 1.0

Magnesium binding site 6 out of 7 in 4aaq

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Magnesium binding site 6 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1526

b:0.0
occ:0.00
O3G F:ATP1527 1.8 0.0 1.0
O1B F:ATP1527 1.8 0.0 1.0
OD1 F:ASP87 1.8 0.0 1.0
O2A F:ATP1527 1.8 0.0 1.0
OD2 F:ASP87 1.9 0.0 1.0
CG F:ASP87 2.2 0.0 1.0
PB F:ATP1527 2.9 0.0 1.0
PG F:ATP1527 3.0 0.0 1.0
PA F:ATP1527 3.1 0.0 1.0
O3B F:ATP1527 3.4 0.0 1.0
O3A F:ATP1527 3.5 0.0 1.0
O2G F:ATP1527 3.6 0.0 1.0
CB F:ASP87 3.6 0.0 1.0
H5'2 F:ATP1527 3.7 0.0 1.0
N F:GLY88 3.8 0.0 1.0
O1A F:ATP1527 4.0 0.0 1.0
O5' F:ATP1527 4.2 0.0 1.0
O1G F:ATP1527 4.2 0.0 1.0
CA F:ASP87 4.2 0.0 1.0
O2B F:ATP1527 4.3 0.0 1.0
C5' F:ATP1527 4.4 0.0 1.0
C F:ASP87 4.6 0.0 1.0
H5'1 F:ATP1527 4.7 0.0 1.0
CA F:GLY88 4.7 0.0 1.0
P F:PO41525 5.0 0.0 1.0

Magnesium binding site 7 out of 7 in 4aaq

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Magnesium binding site 7 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg1526

b:0.0
occ:0.00
O3G G:ATP1527 1.8 0.0 1.0
O1B G:ATP1527 1.8 0.0 1.0
OD1 G:ASP87 1.8 0.0 1.0
O2A G:ATP1527 1.8 0.0 1.0
OD2 G:ASP87 1.9 0.0 1.0
CG G:ASP87 2.2 0.0 1.0
PB G:ATP1527 2.9 0.0 1.0
PG G:ATP1527 3.0 0.0 1.0
PA G:ATP1527 3.1 0.0 1.0
O3B G:ATP1527 3.4 0.0 1.0
O3A G:ATP1527 3.5 0.0 1.0
O2G G:ATP1527 3.6 0.0 1.0
CB G:ASP87 3.6 0.0 1.0
H5'2 G:ATP1527 3.7 0.0 1.0
N G:GLY88 3.8 0.0 1.0
O1A G:ATP1527 4.0 0.0 1.0
O5' G:ATP1527 4.2 0.0 1.0
O1G G:ATP1527 4.2 0.0 1.0
CA G:ASP87 4.2 0.0 1.0
O2B G:ATP1527 4.3 0.0 1.0
C5' G:ATP1527 4.4 0.0 1.0
C G:ASP87 4.6 0.0 1.0
H5'1 G:ATP1527 4.7 0.0 1.0
CA G:GLY88 4.7 0.0 1.0
P G:PO41525 5.0 0.0 1.0

Reference:

D.K.Clare, D.Vasishtan, S.Stagg, J.Quispe, G.W.Farr, M.Topf, A.L.Horwich, H.R.Saibil. Atp-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin. Cell(Cambridge,Mass.) V. 149 113 2012.
ISSN: ISSN 0092-8674
PubMed: 22445172
DOI: 10.1016/J.CELL.2012.02.047
Page generated: Mon Dec 14 09:07:13 2020

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