Magnesium in PDB 4clu: Crystal Structure of Human Soluble Adenylyl Cyclase with Pyrophosphate

Enzymatic activity of Crystal Structure of Human Soluble Adenylyl Cyclase with Pyrophosphate

All present enzymatic activity of Crystal Structure of Human Soluble Adenylyl Cyclase with Pyrophosphate:
4.6.1.1;

Protein crystallography data

The structure of Crystal Structure of Human Soluble Adenylyl Cyclase with Pyrophosphate, PDB code: 4clu was solved by S.Kleinboelting, M.Weyand, C.Steegborn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	87.21 / 1.90
*Space group*	P 6₃
*Cell size a, b, c (Å), α, β, γ (°)*	100.700, 100.700, 97.150, 90.00, 90.00, 120.00
*R / R_free (%)*	15.989 / 20.5

Other elements in 4clu:

The structure of Crystal Structure of Human Soluble Adenylyl Cyclase with Pyrophosphate also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Soluble Adenylyl Cyclase with Pyrophosphate (pdb code 4clu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Soluble Adenylyl Cyclase with Pyrophosphate, PDB code: 4clu:

Magnesium binding site 1 out of 1 in 4clu

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Magnesium Binding Sites List in 4clu

Magnesium binding site 1 out of 1 in the Crystal Structure of Human Soluble Adenylyl Cyclase with Pyrophosphate

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Soluble Adenylyl Cyclase with Pyrophosphate within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg1475 b:56.2 occ:1.00	OD1	A:ASP99	2.3	41.9	1.0
	OD1	A:ASP47	2.6	38.0	1.0
	O2	A:POP1470	2.8	63.7	1.0
	O5	A:POP1470	2.9	77.4	1.0
	O	A:POP1470	3.1	77.1	1.0
	O	A:HOH2040	3.2	52.8	1.0
	CG	A:ASP99	3.4	42.0	1.0
	P2	A:POP1470	3.4	84.5	1.0
	CG	A:ASP47	3.5	38.9	1.0
	O4	A:POP1470	3.6	76.4	1.0
	OD2	A:ASP47	3.6	42.8	1.0
	P1	A:POP1470	3.7	75.4	1.0
	OD2	A:ASP99	3.8	52.3	1.0
	O	A:HOH2071	4.2	36.6	1.0
	O	A:ILE48	4.3	47.1	1.0
	O3	A:POP1470	4.5	67.0	1.0
	N	A:ASP99	4.6	30.7	1.0
	OG1	A:THR52	4.7	38.8	1.0
	CB	A:ASP99	4.7	36.8	1.0
	C	A:ASP99	4.8	27.5	1.0
	CB	A:ALA100	4.8	23.4	1.0
	O1	A:POP1470	4.9	76.2	1.0
	CB	A:ASP47	4.9	32.9	1.0
	CA	A:ASP99	4.9	33.4	1.0
	N	A:ALA100	4.9	28.1	1.0
	O6	A:POP1470	4.9	74.6	1.0

Reference:

S.Kleinboelting, A.Diaz, S.Moniot, J.Van Den Heuvel, M.Weyand, L.R.Levin, J.Buck, C.Steegborn. Crystal Structures of Human Soluble Adenylyl Cyclase Reveal Mechanisms of Catalysis and of Its Activation Through Bicarbonate. Proc.Natl.Acad.Sci.Usa V. 111 3727 2014.
ISSN: ISSN 0027-8424
PubMed: 24567411
DOI: 10.1073/PNAS.1322778111

Page generated: Mon Dec 14 11:41:20 2020

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