Magnesium in PDB 4cns: Crystal Structure of Truncated Human Crmp-4

The structure of Crystal Structure of Truncated Human Crmp-4, PDB code: 4cns was solved by R.Ponnusamy, B.Lohkamp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.99 / 2.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	86.400, 89.620, 133.100, 90.00, 101.40, 90.00
R / Rfree (%)	18.904 / 22.581

The structure of Crystal Structure of Truncated Human Crmp-4 also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Magnesium atom in the Crystal Structure of Truncated Human Crmp-4 (pdb code 4cns). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Crystal Structure of Truncated Human Crmp-4, PDB code: 4cns:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Crystal Structure of Truncated Human Crmp-4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Truncated Human Crmp-4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1494 b:37.9 occ:1.00 O A:ASP128 2.6 19.3 1.0 O A:GLY464 2.7 18.7 1.0 O A:GLY466 2.8 21.6 1.0 C A:ASP128 3.5 17.8 1.0 CA A:ASP128 3.6 17.2 1.0 CB A:ASP128 3.9 16.9 1.0 C A:GLY464 3.9 18.0 1.0 C A:GLY466 4.0 19.4 1.0 CG A:ASP128 4.4 16.5 1.0 CA A:GLY464 4.5 17.8 1.0 OD1 A:ASP128 4.6 15.6 1.0 N A:GLY129 4.7 17.7 1.0 C A:ALA465 4.7 18.3 1.0 N A:GLY466 4.8 18.4 1.0 O A:ALA465 4.8 17.6 1.0 CA A:ARG467 4.8 19.7 1.0 N A:ARG467 4.9 19.4 1.0 N A:ALA465 4.9 17.8 1.0 CA A:GLY466 5.0 19.0 1.0

Magnesium binding site 2 out of 5 in the Crystal Structure of Truncated Human Crmp-4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Truncated Human Crmp-4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1495 b:24.2 occ:1.00 OG1 A:THR303 2.1 17.1 1.0 O A:HOH2103 2.5 14.6 1.0 O A:HOH2119 2.9 12.7 1.0 CE A:LYS254 3.0 17.0 1.0 CB A:THR303 3.3 16.6 1.0 CG2 A:THR303 3.5 16.8 1.0 CD1 A:ILE279 3.6 10.8 1.0 NZ A:LYS254 3.8 17.9 1.0 CB A:ALA332 4.0 11.8 1.0 CD A:LYS254 4.3 15.8 1.0 O A:SER304 4.3 11.8 1.0 N A:SER304 4.4 13.9 1.0 CA A:THR303 4.5 15.9 1.0 CG A:LYS254 4.5 15.2 1.0 C A:THR303 4.7 14.5 1.0 O A:ALA332 4.7 14.2 1.0 O A:PRO305 4.8 11.5 1.0 C A:SER304 4.8 11.8 1.0 OG1 A:THR355 4.9 13.2 1.0

Magnesium binding site 3 out of 5 in the Crystal Structure of Truncated Human Crmp-4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Truncated Human Crmp-4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1490 b:29.3 occ:1.00 O B:GLY464 2.1 20.6 1.0 O B:ASP128 2.2 23.2 1.0 O B:GLY466 2.3 20.3 1.0 O B:HOH2037 2.3 6.0 1.0 C B:GLY464 3.1 21.9 1.0 C B:ASP128 3.2 21.8 1.0 C B:GLY466 3.4 20.8 1.0 CA B:ASP128 3.5 22.3 1.0 CA B:GLY464 3.7 23.3 1.0 N B:GLY466 4.0 20.4 1.0 C B:ALA465 4.1 20.9 1.0 CA B:GLY466 4.2 20.5 1.0 N B:ALA465 4.2 21.1 1.0 CB B:ASP128 4.2 21.9 1.0 O B:ALA127 4.4 22.1 1.0 O B:ALA465 4.4 20.3 1.0 N B:GLY129 4.4 21.1 1.0 N B:ARG467 4.5 21.4 1.0 CA B:ALA465 4.5 21.1 1.0 O B:SER131 4.7 18.8 1.0 N B:ASP128 4.7 21.6 1.0 OD1 B:ASP128 4.8 22.0 1.0 CA B:ARG467 4.8 22.3 1.0 CG B:ASP128 4.8 21.7 1.0

Magnesium binding site 4 out of 5 in the Crystal Structure of Truncated Human Crmp-4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Truncated Human Crmp-4 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1491 b:37.4 occ:1.00 O C:GLY464 2.3 23.6 1.0 O C:ASP128 2.5 26.3 1.0 O C:GLY466 2.7 28.9 1.0 C C:GLY464 3.4 23.4 1.0 C C:ASP128 3.4 25.4 1.0 CA C:ASP128 3.8 24.3 1.0 C C:GLY466 3.9 26.7 1.0 CA C:GLY464 4.1 23.4 1.0 CB C:ASP128 4.1 24.9 1.0 C C:ALA465 4.4 24.9 1.0 N C:ALA465 4.5 23.9 1.0 N C:GLY466 4.5 25.4 1.0 O C:ALA465 4.6 26.6 1.0 N C:GLY129 4.6 25.5 1.0 CA C:ALA465 4.7 23.8 1.0 CA C:GLY466 4.8 25.4 1.0 CG C:ASP128 4.8 24.3 1.0 OD1 C:ASP128 4.9 25.0 1.0 N C:ARG467 4.9 27.5 1.0

Magnesium binding site 5 out of 5 in the Crystal Structure of Truncated Human Crmp-4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Truncated Human Crmp-4 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1491 b:23.6 occ:1.00 O D:ASP128 2.3 12.9 1.0 O D:GLY464 2.3 14.2 1.0 O D:GLY466 2.7 14.7 1.0 C D:ASP128 3.3 13.5 1.0 C D:GLY464 3.4 12.7 1.0 CA D:ASP128 3.6 13.7 1.0 C D:GLY466 4.0 14.3 1.0 CA D:GLY464 4.1 12.8 1.0 CB D:ASP128 4.1 14.0 1.0 C D:ALA465 4.4 12.8 1.0 N D:GLY466 4.5 13.1 1.0 N D:ALA465 4.5 12.6 1.0 N D:GLY129 4.5 13.6 1.0 O D:ALA465 4.7 12.5 1.0 CA D:GLY466 4.8 13.5 1.0 CA D:ALA465 4.8 12.9 1.0 CG D:ASP128 4.8 13.5 1.0 OD1 D:ASP128 4.8 13.1 1.0 O D:ALA127 4.8 13.1 1.0 N D:ARG467 4.9 15.1 1.0 N D:ASP128 5.0 14.0 1.0

R.Ponnusamy, A.Lebedev, S.Pahlow, B.Lohkamp. Crystal Structure of Human Crmp-4: Correction of Intensities For Lattice-Translocation Disorder Acta Crystallogr.,Sect.D V. 70 1680 2014.
ISSN: ISSN 0907-4449
PubMed: 24914979
DOI: 10.1107/S1399004714006634