Magnesium in PDB 4cs3: Catalytic Domain of Pyrrolysyl-Trna Synthetase Mutant Y306A, Y384F in Complex with An Adenylated Furan-Bearing Noncanonical Amino Acid and Pyrophosphate

Enzymatic activity of Catalytic Domain of Pyrrolysyl-Trna Synthetase Mutant Y306A, Y384F in Complex with An Adenylated Furan-Bearing Noncanonical Amino Acid and Pyrophosphate

Protein crystallography data

Magnesium Binding Sites:

Magnesium binding site 1 out of 2 in 4cs3

Magnesium Binding Sites List in 4cs3

Magnesium binding site 1 out of 2 in the Catalytic Domain of Pyrrolysyl-Trna Synthetase Mutant Y306A, Y384F in Complex with An Adenylated Furan-Bearing Noncanonical Amino Acid and Pyrophosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Catalytic Domain of Pyrrolysyl-Trna Synthetase Mutant Y306A, Y384F in Complex with An Adenylated Furan-Bearing Noncanonical Amino Acid and Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1463 b:43.6 occ:1.00 O A:HOH2140 2.1 32.5 1.0 O A:HOH2101 2.1 41.9 1.0 O A:HOH2100 2.1 40.6 1.0 O6 A:POP1462 2.2 51.3 0.8 O1 A:POP1462 2.4 0.3 0.8 HH11 A:ARG330 3.4 30.1 1.0 HE2 A:HIS338 3.5 37.6 1.0 P2 A:POP1462 3.5 47.3 0.8 P1 A:POP1462 3.6 0.5 0.8 O A:POP1462 3.9 51.5 0.8 HE22 A:GLN287 4.0 65.3 1.0 HD2 A:HIS338 4.0 33.8 1.0 OE2 A:GLU332 4.1 33.9 1.0 NH1 A:ARG330 4.1 23.5 1.0 O3 A:POP1462 4.1 0.8 0.8 HH12 A:ARG330 4.1 30.1 1.0 NE2 A:HIS338 4.1 31.3 1.0 O4 A:POP1462 4.2 53.6 0.8 CD2 A:HIS338 4.4 28.2 1.0 OE1 A:GLN287 4.5 57.8 1.0 OE1 A:GLU332 4.5 54.7 1.0 O5 A:POP1462 4.6 41.8 0.8 HD3 A:ARG330 4.7 28.5 1.0 NE2 A:GLN287 4.7 54.4 1.0 CD A:GLU332 4.7 44.6 1.0 O2 A:POP1462 4.8 0.1 0.8 N7 A:AMP1459 4.8 18.9 0.9 HD2 A:ARG330 4.8 28.5 1.0

Magnesium binding site 2 out of 2 in 4cs3

Magnesium Binding Sites List in 4cs3

Magnesium binding site 2 out of 2 in the Catalytic Domain of Pyrrolysyl-Trna Synthetase Mutant Y306A, Y384F in Complex with An Adenylated Furan-Bearing Noncanonical Amino Acid and Pyrophosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Catalytic Domain of Pyrrolysyl-Trna Synthetase Mutant Y306A, Y384F in Complex with An Adenylated Furan-Bearing Noncanonical Amino Acid and Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1464 b:23.3 occ:1.00 O5 A:POP1462 1.9 41.8 0.8 HG A:SER399 2.0 33.7 1.0 O A:HOH2209 2.1 45.4 1.0 O A:HOH2202 2.1 42.5 1.0 O1P A:AMP1459 2.3 27.4 0.9 OG A:SER399 2.3 28.1 1.0 OE2 A:GLU396 2.3 28.6 1.0 OE1 A:GLU396 2.6 36.2 1.0 CD A:GLU396 2.8 31.7 1.0 O A:HOH2208 3.1 43.7 1.0 P2 A:POP1462 3.2 47.3 0.8 HB2 A:SER399 3.3 30.6 1.0 CB A:SER399 3.4 25.5 1.0 O4 A:POP1462 3.6 53.6 0.8 P A:AMP1459 3.7 25.9 0.9 O A:HOH2195 3.9 36.3 1.0 HB3 A:SER399 3.9 30.6 1.0 O A:POP1462 3.9 51.5 0.8 O2P A:AMP1459 4.2 24.5 0.9 H3' A:AMP1459 4.2 26.6 0.9 OD1 A:ASP389 4.3 34.8 1.0 CG A:GLU396 4.3 24.1 1.0 O6 A:POP1462 4.4 51.3 0.8 O3' A:AMP1459 4.4 23.6 0.9 O3P A:AMP1459 4.4 26.7 0.9 H5'1 A:AMP1459 4.5 27.6 0.9 CA A:SER399 4.5 22.3 1.0 OD2 A:ASP389 4.6 44.6 1.0 HG2 A:GLU396 4.6 28.9 1.0 N A:SER399 4.6 22.6 1.0 H A:SER399 4.7 27.1 1.0 CG A:ASP389 4.7 33.7 1.0 O3 A:POP1462 4.7 0.8 0.8 HA A:SER399 4.7 26.8 1.0 HG3 A:GLU396 4.7 28.9 1.0 O5' A:AMP1459 4.8 25.3 0.9 C3' A:AMP1459 4.8 22.1 0.9 HO3' A:AMP1459 4.9 28.3 0.9

Reference: