Magnesium in PDB 4eru: Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica

The structure of Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica, PDB code: 4eru was solved by Y.Kim, R.Wu, R.Jedrzejczak, R.N.Brown, J.R.Cort, F.Heffron, E.S.Nakayasu, J.N.Adkins, A.Joachimiak, Midwest Center For Structural Genomics(Mcsg), Program For The Characterization Of Secreted Effectorproteins (Pcsep), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.69 / 2.10
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	107.138, 107.138, 59.935, 90.00, 90.00, 120.00
R / Rfree (%)	17.3 / 22.2

The binding sites of Magnesium atom in the Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica (pdb code 4eru). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica, PDB code: 4eru:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:50.7 occ:0.62 O A:HOH335 2.0 45.5 1.0 OE1 A:GLU113 2.2 57.2 1.0 OE2 A:GLU110 2.2 55.7 1.0 OE1 A:GLU143 2.5 70.5 1.0 NE2 A:HIS47 2.6 68.3 1.0 CD A:GLU110 3.0 52.7 1.0 CE1 A:HIS47 3.1 70.4 1.0 CD A:GLU143 3.1 63.8 1.0 OE1 A:GLU110 3.1 56.0 1.0 MG A:MG203 3.3 36.6 0.7 CD A:GLU113 3.4 57.1 1.0 OE2 A:GLU143 3.6 64.3 1.0 CD2 A:LEU24 3.7 43.0 1.0 CD2 A:HIS47 3.8 64.6 1.0 CG A:GLU143 4.0 60.9 1.0 OE2 A:GLU113 4.1 58.5 1.0 CG A:GLU113 4.4 46.9 1.0 ND1 A:HIS47 4.4 72.6 1.0 OE2 A:GLU21 4.4 49.1 1.0 CG A:GLU110 4.4 51.1 1.0 OG1 A:THR51 4.5 40.1 1.0 CB A:GLU113 4.5 39.8 1.0 OE1 A:GLN54 4.6 44.2 1.0 CA A:GLU110 4.6 38.8 1.0 CG A:HIS47 4.8 62.4 1.0 CG1 A:VAL109 4.8 37.4 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:36.6 occ:0.68 O A:HOH335 2.2 45.5 1.0 OE1 A:GLN54 2.2 44.2 1.0 OE1 A:GLU21 2.3 50.8 1.0 OE2 A:GLU143 2.4 64.3 1.0 OE2 A:GLU21 2.4 49.1 1.0 CD A:GLU21 2.7 48.8 1.0 OE1 A:GLU113 3.0 57.2 1.0 CD A:GLU143 3.1 63.8 1.0 OE1 A:GLU143 3.1 70.5 1.0 CD A:GLN54 3.3 47.0 1.0 MG A:MG202 3.3 50.7 0.6 CD A:GLU113 3.5 57.1 1.0 OE2 A:GLU113 3.5 58.5 1.0 NE2 A:GLN54 4.0 43.7 1.0 CB A:GLN54 4.2 39.2 1.0 CG A:GLU21 4.2 49.4 1.0 CE2 A:TYR117 4.3 39.8 1.0 CG A:GLN54 4.3 45.2 1.0 OG1 A:THR51 4.3 40.1 1.0 CG2 A:THR51 4.4 37.4 1.0 OH A:TYR117 4.4 43.9 1.0 CG A:GLU143 4.5 60.9 1.0 CG2 A:THR139 4.5 36.6 1.0 CG A:GLU113 4.7 46.9 1.0 CB A:THR51 4.8 41.5 1.0 CB A:GLU113 4.8 39.8 1.0 CA A:THR51 4.8 41.9 1.0 CZ A:TYR117 4.8 42.3 1.0 NE2 A:HIS47 4.9 68.3 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:38.9 occ:0.67 OE1 B:GLU143 2.1 61.4 1.0 O B:HOH352 2.1 48.1 1.0 OE1 B:GLN54 2.2 44.3 1.0 OE2 B:GLU21 2.3 47.0 1.0 OE1 B:GLU21 2.5 43.7 1.0 CD B:GLU21 2.8 47.6 1.0 OE1 B:GLU113 2.9 60.6 1.0 CD B:GLU143 3.0 57.3 1.0 CD B:GLN54 3.3 43.1 1.0 CD B:GLU113 3.4 54.4 1.0 OE2 B:GLU143 3.4 60.5 1.0 MG B:MG203 3.4 42.8 0.7 OE2 B:GLU113 3.5 53.0 1.0 NE2 B:GLN54 4.1 45.5 1.0 OG1 B:THR51 4.2 36.5 1.0 CE2 B:TYR117 4.2 37.4 1.0 CG B:GLU21 4.3 47.5 1.0 CG B:GLU143 4.3 52.6 1.0 CB B:GLN54 4.3 38.5 1.0 CG B:GLN54 4.4 42.3 1.0 OH B:TYR117 4.5 40.8 1.0 CG2 B:THR139 4.5 33.5 1.0 CG2 B:THR51 4.6 40.2 1.0 CG B:GLU113 4.6 44.6 1.0 NE2 B:HIS47 4.7 54.3 1.0 CB B:GLU113 4.8 37.5 1.0 CZ B:TYR117 4.8 39.4 1.0 CB B:THR51 4.8 41.0 1.0 CA B:THR51 4.9 39.4 1.0 O B:HOH355 4.9 67.7 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg203 b:42.8 occ:0.66 O B:HOH352 2.2 48.1 1.0 OE1 B:GLU113 2.2 60.6 1.0 OE2 B:GLU110 2.3 53.6 1.0 OE2 B:GLU143 2.4 60.5 1.0 NE2 B:HIS47 2.6 54.3 1.0 CE1 B:HIS47 2.6 57.8 1.0 CD B:GLU110 3.0 53.2 1.0 OE1 B:GLU110 3.0 52.5 1.0 CD B:GLU143 3.3 57.3 1.0 MG B:MG202 3.4 38.9 0.7 CD B:GLU113 3.5 54.4 1.0 OE1 B:GLU143 3.5 61.4 1.0 CD2 B:LEU24 3.8 41.8 1.0 ND1 B:HIS47 3.9 59.2 1.0 CD2 B:HIS47 3.9 50.4 1.0 O B:HOH355 4.2 67.7 1.0 OE2 B:GLU113 4.2 53.0 1.0 CG B:GLU110 4.4 46.2 1.0 CG B:GLU113 4.4 44.6 1.0 OG1 B:THR51 4.5 36.5 1.0 CG B:HIS47 4.6 53.0 1.0 CA B:GLU110 4.6 39.6 1.0 CB B:GLU113 4.6 37.5 1.0 OE1 B:GLN54 4.6 44.3 1.0 CG B:GLU143 4.7 52.6 1.0 OE1 B:GLU21 4.7 43.7 1.0 CG1 B:VAL109 4.8 37.8 1.0

Y.Kim, R.Wu, R.Jedrzejczak, R.N.Brown, J.R.Cort, F.Heffron, E.S.Nakayasu, J.N.Adkins, A.Joachimiak. Crystal Structure of Putative Cytoplasmic Protein, Ycif Bacterial Stress Response Protein From Salmonella Enterica To Be Published.