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Magnesium in PDB 4eum: Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II

Enzymatic activity of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II

All present enzymatic activity of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II:
2.7.1.45;

Protein crystallography data

The structure of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II, PDB code: 4eum was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzymefunction Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.20 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 79.540, 49.528, 83.267, 90.00, 101.50, 90.00
R / Rfree (%) 17.6 / 22.1

Other elements in 4eum:

The structure of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II (pdb code 4eum). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II, PDB code: 4eum:

Magnesium binding site 1 out of 1 in 4eum

Go back to Magnesium Binding Sites List in 4eum
Magnesium binding site 1 out of 1 in the Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg405

b:49.1
occ:1.00
 O A:HOH588 2.1 33.1 1.0
O A:HOH727 2.1 49.9 1.0
O A:HOH666 2.1 48.8 1.0
O A:HOH669 2.1 39.9 1.0
O A:LEU40 2.1 20.8 1.0
O A:HOH581 2.1 37.1 1.0
C A:LEU40 3.3 25.9 1.0
O A:HOH598 4.0 44.9 1.0
O A:HOH684 4.1 51.4 1.0
CA A:LEU40 4.1 17.9 1.0
O A:HOH618 4.1 36.5 1.0
OD2 A:ASP264 4.2 22.1 1.0
N A:ARG41 4.3 18.9 1.0
CA A:ARG41 4.3 23.6 1.0
OD1 A:ASP264 4.4 23.0 1.0
CB A:LEU40 4.5 19.3 1.0
OE2 A:GLU43 4.6 51.6 1.0
CG A:ASP264 4.7 22.1 1.0
CB A:ARG41 4.7 32.2 1.0
O A:HOH719 4.7 46.3 1.0
OE1 A:GLU43 4.8 38.0 1.0
CD A:PRO42 4.9 25.2 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II To Be Published.
Page generated: Fri Aug 16 14:37:05 2024

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