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Magnesium in PDB 4evw: Crystal Structure of the Nucleoside-Diphosphate-Sugar Pyrophosphorylase From Vibrio Cholerae RC9. Northeast Structural Genomics Consortium (Nesg) Target VCR193.

Protein crystallography data

The structure of Crystal Structure of the Nucleoside-Diphosphate-Sugar Pyrophosphorylase From Vibrio Cholerae RC9. Northeast Structural Genomics Consortium (Nesg) Target VCR193., PDB code: 4evw was solved by S.Vorobiev, H.Neely, M.Su, J.Seetharaman, M.Mao, R.Xiao, E.Kohan, J.K.Everett, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeaststructural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.25 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.303, 117.003, 128.561, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 20.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Nucleoside-Diphosphate-Sugar Pyrophosphorylase From Vibrio Cholerae RC9. Northeast Structural Genomics Consortium (Nesg) Target VCR193. (pdb code 4evw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Nucleoside-Diphosphate-Sugar Pyrophosphorylase From Vibrio Cholerae RC9. Northeast Structural Genomics Consortium (Nesg) Target VCR193., PDB code: 4evw:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4evw

Go back to Magnesium Binding Sites List in 4evw
Magnesium binding site 1 out of 2 in the Crystal Structure of the Nucleoside-Diphosphate-Sugar Pyrophosphorylase From Vibrio Cholerae RC9. Northeast Structural Genomics Consortium (Nesg) Target VCR193.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Nucleoside-Diphosphate-Sugar Pyrophosphorylase From Vibrio Cholerae RC9. Northeast Structural Genomics Consortium (Nesg) Target VCR193. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:40.2
occ:1.00
O A:HOH584 2.0 37.4 1.0
O A:HOH515 2.2 37.0 1.0
O A:HOH514 2.3 40.9 1.0
O A:HOH430 2.4 30.6 1.0
OE1 A:GLN214 3.9 67.0 1.0
OE1 A:GLU211 4.0 39.3 1.0
OE2 A:GLU211 4.1 36.8 1.0
O A:HOH432 4.2 31.0 1.0
O A:HOH490 4.2 36.4 1.0
OE1 A:GLU197 4.3 37.2 1.0
OE2 A:GLU197 4.3 45.3 1.0
O A:HOH537 4.4 47.9 1.0
CD A:GLU211 4.5 39.3 1.0
CG A:ARG193 4.6 25.4 1.0
CD A:GLU197 4.7 39.4 1.0
CD A:GLN214 4.8 64.7 1.0
NE2 A:GLN214 4.9 63.9 1.0

Magnesium binding site 2 out of 2 in 4evw

Go back to Magnesium Binding Sites List in 4evw
Magnesium binding site 2 out of 2 in the Crystal Structure of the Nucleoside-Diphosphate-Sugar Pyrophosphorylase From Vibrio Cholerae RC9. Northeast Structural Genomics Consortium (Nesg) Target VCR193.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Nucleoside-Diphosphate-Sugar Pyrophosphorylase From Vibrio Cholerae RC9. Northeast Structural Genomics Consortium (Nesg) Target VCR193. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:44.2
occ:1.00
O B:HOH502 2.1 40.7 1.0
O B:HOH584 2.1 36.5 1.0
O B:HOH583 2.2 42.5 1.0
O B:HOH463 2.2 39.2 1.0
O B:HOH462 2.5 34.8 1.0
O B:HOH556 2.5 45.5 1.0
OE1 B:GLU211 3.8 36.7 1.0
OE1 B:GLN214 3.8 75.0 1.0
OE2 B:GLU211 4.0 39.8 1.0
O B:HOH430 4.2 29.4 1.0
O B:HOH594 4.2 46.1 1.0
CD B:GLU211 4.3 41.1 1.0
O B:HOH533 4.4 48.9 1.0
OE1 B:GLU197 4.5 35.8 1.0
OE2 B:GLU197 4.6 46.8 1.0
CG B:ARG193 4.8 27.0 1.0
CD B:GLN214 4.9 70.1 1.0

Reference:

S.Vorobiev, H.Neely, M.Su, J.Seetharaman, M.Mao, R.Xiao, E.Kohan, J.K.Everett, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt. Crystal Structure of the Nucleoside-Diphosphate-Sugar Pyrophosphorylase From Vibrio Cholerae RC9. To Be Published.
Page generated: Mon Dec 14 14:33:33 2020

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