Magnesium in PDB 4f3u: Crystal Structure of 5-Hydroxy-2'-Deoxycytidine Base Paired with 2'- Deoxyguanosine in Dickerson Drew Dodecamer

The structure of Crystal Structure of 5-Hydroxy-2'-Deoxycytidine Base Paired with 2'- Deoxyguanosine in Dickerson Drew Dodecamer, PDB code: 4f3u was solved by M.W.Szulik, B.Nocek, A.Joachimiak, M.P.Stone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	25.287, 40.217, 65.471, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 23.2

The binding sites of Magnesium atom in the Crystal Structure of 5-Hydroxy-2'-Deoxycytidine Base Paired with 2'- Deoxyguanosine in Dickerson Drew Dodecamer (pdb code 4f3u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of 5-Hydroxy-2'-Deoxycytidine Base Paired with 2'- Deoxyguanosine in Dickerson Drew Dodecamer, PDB code: 4f3u:

Magnesium binding site 1 out of 1 in the Crystal Structure of 5-Hydroxy-2'-Deoxycytidine Base Paired with 2'- Deoxyguanosine in Dickerson Drew Dodecamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 5-Hydroxy-2'-Deoxycytidine Base Paired with 2'- Deoxyguanosine in Dickerson Drew Dodecamer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:28.5 occ:1.00 O B:HOH130 2.0 23.8 1.0 O B:HOH129 2.0 28.6 1.0 O A:HOH234 2.0 23.9 1.0 O B:HOH131 2.1 25.8 1.0 O B:HOH101 2.1 27.2 1.0 O A:HOH233 2.1 26.7 1.0 O A:HOH231 4.2 37.9 1.0 O B:HOH107 4.2 33.7 1.0 O6 B:DG22 4.3 23.1 1.0 O B:HOH105 4.4 33.6 1.0 N7 A:DG2 4.4 23.8 1.0 O6 A:DG2 4.4 23.9 1.0 C5 A:DC1 4.4 22.8 1.0 C6 A:DC1 4.8 24.0 1.0

M.W.Szulik, B.Nocek, A.Joachimiak, M.P.Stone. Crystal Structure of 5-Hydroxy-2'-Deoxycytidine Base Paired with 2'-Deoxyguanosine in Dickerson Drew Dodecamer To Be Published.