Magnesium in PDB 4lby: Identifying Ligand Binding Hot Spots in Proteins Using Brominated Fragments

The structure of Identifying Ligand Binding Hot Spots in Proteins Using Brominated Fragments, PDB code: 4lby was solved by M.K.Groftehauge, M.Therkelsen, R.Taaning, T.Skrydstrup, J.P.Morth, P.Nissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.35 / 2.69
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	147.480, 98.380, 39.650, 90.00, 95.85, 90.00
R / Rfree (%)	15.6 / 20.7

The binding sites of Magnesium atom in the Identifying Ligand Binding Hot Spots in Proteins Using Brominated Fragments (pdb code 4lby). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Identifying Ligand Binding Hot Spots in Proteins Using Brominated Fragments, PDB code: 4lby:

Magnesium binding site 1 out of 1 in the Identifying Ligand Binding Hot Spots in Proteins Using Brominated Fragments


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Identifying Ligand Binding Hot Spots in Proteins Using Brominated Fragments within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:7.4 occ:1.00 O A:HOH657 1.9 14.5 1.0 O1G A:GNP501 1.9 15.0 1.0 OG1 A:THR25 1.9 19.9 1.0 O A:HOH662 2.1 22.3 1.0 O2B A:GNP501 2.1 7.7 1.0 OG1 A:THR62 2.1 21.7 1.0 CB A:THR62 3.0 19.8 1.0 PG A:GNP501 3.1 23.4 1.0 CB A:THR25 3.2 20.3 1.0 PB A:GNP501 3.2 28.2 1.0 N3B A:GNP501 3.4 16.8 1.0 N A:THR25 3.7 21.0 1.0 O3G A:GNP501 3.9 26.0 1.0 OD2 A:ASP81 3.9 30.0 1.0 CG2 A:THR62 3.9 18.2 1.0 CA A:THR25 4.0 18.1 1.0 OD2 A:ASP51 4.1 30.9 1.0 CA A:THR62 4.1 20.2 1.0 O1B A:GNP501 4.1 18.9 1.0 N A:THR62 4.2 19.1 1.0 O A:CYS82 4.2 23.6 1.0 CG2 A:THR25 4.2 17.2 1.0 O2G A:GNP501 4.3 20.6 1.0 O3A A:GNP501 4.4 33.5 1.0 OD1 A:ASP51 4.4 22.3 1.0 CE A:LYS24 4.4 18.9 1.0 OD1 A:ASP81 4.4 25.3 1.0 O2A A:GNP501 4.5 27.7 1.0 CG A:ASP81 4.5 22.5 1.0 CB A:LYS24 4.6 27.8 1.0 CG A:ASP51 4.7 23.3 1.0 PA A:GNP501 4.7 24.4 1.0 C A:LYS24 4.7 21.9 1.0 O1A A:GNP501 4.8 20.7 1.0

M.K.Grftehauge, M.O.Therkelsen, R.Taaning, T.Skrydstrup, J.P.Morth, P.Nissen. Identifying Ligand-Binding Hot Spots in Proteins Using Brominated Fragments. Acta Crystallogr.,Sect.F V. 69 1060 2013.
ISSN: ESSN 1744-3091
PubMed: 23989163
DOI: 10.1107/S1744309113018551