Magnesium in PDB 4nh0: Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc

The structure of Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc, PDB code: 4nh0 was solved by O.S.Rosenberg, J.S.Cox, R.M.Stroud, N.Strauli, D.Dovala, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.93 / 2.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	251.816, 116.316, 174.110, 90.00, 102.70, 90.00
R / Rfree (%)	22.6 / 24.6

The binding sites of Magnesium atom in the Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc (pdb code 4nh0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc, PDB code: 4nh0:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1402 b:82.7 occ:1.00 OG A:SER838 1.9 80.0 1.0 O A:HOH1504 2.0 78.0 1.0 O A:GLY865 2.1 99.4 1.0 O2G A:ATP1405 2.1 0.9 1.0 O A:HOH1503 2.6 73.5 1.0 O1B A:ATP1405 2.7 78.8 1.0 C A:GLY865 2.8 90.1 1.0 CA A:GLY865 3.1 88.7 1.0 CB A:SER838 3.2 80.0 1.0 PG A:ATP1405 3.5 85.5 1.0 PB A:ATP1405 3.8 74.3 1.0 OD1 A:ASP941 3.9 70.1 1.0 O3B A:ATP1405 3.9 87.0 1.0 N A:GLY866 3.9 79.7 1.0 OD2 A:ASP941 4.1 96.3 1.0 N A:SER838 4.2 81.5 1.0 O1G A:ATP1405 4.2 69.8 1.0 CG A:ASP941 4.2 80.2 1.0 CA A:SER838 4.3 72.5 1.0 O2A A:ATP1405 4.3 0.9 1.0 N A:GLY865 4.4 85.2 1.0 CA A:GLY866 4.5 85.8 1.0 O3G A:ATP1405 4.6 92.1 1.0 O2B A:ATP1405 4.8 78.6 1.0 CE A:LYS837 4.9 77.8 1.0

Magnesium binding site 2 out of 4 in the Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1403 b:77.2 occ:1.00 O1B A:ATP1404 1.9 86.6 1.0 O A:HOH1501 2.0 72.4 1.0 O A:HOH1502 2.0 88.0 1.0 O3G A:ATP1404 2.1 96.7 1.0 OG A:SER1123 2.2 75.4 1.0 PB A:ATP1404 2.9 82.7 1.0 PG A:ATP1404 3.0 97.8 1.0 O1G A:ATP1404 3.2 92.1 1.0 O3B A:ATP1404 3.3 90.0 1.0 CB A:SER1123 3.5 85.2 1.0 O2B A:ATP1404 3.5 62.8 1.0 NZ A:LYS1122 3.6 78.2 1.0 OD1 A:ASP1214 3.9 63.6 1.0 N A:SER1123 4.1 78.0 1.0 CA A:SER1123 4.3 69.6 1.0 O3A A:ATP1404 4.4 73.6 1.0 OD1 A:ASP1213 4.4 69.2 1.0 O2G A:ATP1404 4.4 94.6 1.0 OD2 A:ASP1214 4.4 82.2 1.0 OD2 A:ASP1213 4.4 78.0 1.0 O2A A:ATP1404 4.6 0.9 1.0 OG A:SER1152 4.6 89.7 1.0 CG A:ASP1214 4.6 69.5 1.0 CB A:LYS1122 4.7 73.1 1.0 CG A:ASP1213 4.8 65.4 1.0 PA A:ATP1404 4.9 69.0 1.0

Magnesium binding site 3 out of 4 in the Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1402 b:59.5 occ:1.00 OG B:SER1123 2.0 39.2 1.0 O B:HOH1501 2.0 46.8 1.0 O2G B:ATP1404 2.0 60.2 1.0 O1B B:ATP1404 2.0 97.9 1.0 O B:HOH1502 2.1 74.4 1.0 CB B:SER1123 3.0 50.8 1.0 PB B:ATP1404 3.2 49.2 1.0 PG B:ATP1404 3.3 64.5 1.0 O3B B:ATP1404 3.5 70.5 1.0 O2A B:ATP1404 3.7 74.2 1.0 OG B:SER1152 3.9 59.2 1.0 N B:SER1123 4.1 45.7 1.0 CA B:SER1123 4.2 51.1 1.0 O1G B:ATP1404 4.2 53.5 1.0 O2B B:ATP1404 4.2 40.4 1.0 OD2 B:ASP1213 4.3 47.7 1.0 CB B:SER1152 4.3 39.2 1.0 O3G B:ATP1404 4.3 52.2 1.0 O3A B:ATP1404 4.3 35.0 1.0 PA B:ATP1404 4.4 53.5 1.0 OD2 B:ASP1214 4.5 60.5 1.0 NZ B:LYS1122 4.7 68.9 1.0 OD1 B:ASP1213 4.7 48.7 1.0 OD1 B:ASP1214 4.7 54.9 1.0 O1A B:ATP1404 4.8 63.6 1.0 CG B:ASP1213 4.9 49.1 1.0

Magnesium binding site 4 out of 4 in the Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1403 b:86.8 occ:1.00 O2G B:ATP1405 2.0 0.5 1.0 O B:HOH1504 2.0 86.0 1.0 OG B:SER838 2.0 82.5 1.0 O1B B:ATP1405 2.2 0.1 1.0 O B:HOH1503 2.2 75.7 1.0 PG B:ATP1405 2.9 0.6 1.0 O3B B:ATP1405 3.1 0.1 1.0 PB B:ATP1405 3.2 0.7 1.0 CB B:SER838 3.2 89.6 1.0 O3G B:ATP1405 3.3 0.6 1.0 O B:GLY865 3.4 96.2 1.0 O2A B:ATP1405 3.7 0.2 1.0 C B:GLY865 3.7 82.8 1.0 CA B:GLY865 4.0 70.8 1.0 N B:SER838 4.1 87.6 1.0 OD1 B:ASP941 4.1 69.2 1.0 O2B B:ATP1405 4.1 97.5 1.0 CA B:SER838 4.2 88.4 1.0 OD2 B:ASP941 4.3 0.3 1.0 O1G B:ATP1405 4.3 70.0 1.0 O3A B:ATP1405 4.4 79.7 1.0 N B:GLY866 4.5 79.1 1.0 CG B:ASP941 4.5 94.1 1.0 PA B:ATP1405 4.6 98.5 1.0 CE B:LYS837 4.9 85.2 1.0 CB B:LYS837 5.0 63.9 1.0 CA B:GLY866 5.0 87.6 1.0

O.S.Rosenberg, J.S.Cox, R.M.Stroud, N.Strauli, D.Dovala. Cytoplasmic Domain of the Thermomonospora Curvata Type VII Secretion Atpase Eccc To Be Published.