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Magnesium in PDB 4o7l: Saicar Synthetase (Type-2) in Complex with Adp

Enzymatic activity of Saicar Synthetase (Type-2) in Complex with Adp

All present enzymatic activity of Saicar Synthetase (Type-2) in Complex with Adp:
6.3.2.6;

Protein crystallography data

The structure of Saicar Synthetase (Type-2) in Complex with Adp, PDB code: 4o7l was solved by K.Manjunath, J.Jeyakanthan, K.Sekar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.84 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 44.040, 153.780, 78.240, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 24.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Saicar Synthetase (Type-2) in Complex with Adp (pdb code 4o7l). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Saicar Synthetase (Type-2) in Complex with Adp, PDB code: 4o7l:

Magnesium binding site 1 out of 1 in 4o7l

Go back to Magnesium Binding Sites List in 4o7l
Magnesium binding site 1 out of 1 in the Saicar Synthetase (Type-2) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Saicar Synthetase (Type-2) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg305

b:38.3
occ:1.00
O A:HOH488 2.0 28.7 1.0
O2A A:ADP301 2.7 35.9 0.8
O3A A:ADP301 2.9 38.7 0.8
PA A:ADP301 3.4 35.0 0.8
O2B A:ADP301 3.6 39.9 0.8
PB A:ADP301 3.7 39.7 0.8
O1B A:ADP301 3.9 42.2 0.8
OE2 A:GLU177 4.2 21.9 1.0
OD2 A:ASP190 4.2 21.3 1.0
NZ A:LYS13 4.2 28.5 1.0
O1A A:ADP301 4.4 36.1 0.8
OD1 A:ASP190 4.5 19.3 1.0
NZ A:LYS122 4.5 28.9 1.0
O5' A:ADP301 4.6 34.0 0.8
C3' A:ADP301 4.7 29.7 0.8
CG A:ASP190 4.7 20.0 1.0
C5' A:ADP301 4.9 32.3 0.8

Reference:

K.Manjunath, J.Jeyakanthan, K.Sekar. Saicar Synthetase (Type-2) in Complex with Adp To Be Published.
Page generated: Mon Aug 11 21:26:37 2025

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