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Magnesium in PDB 4o8c: Structure of the H170Y Mutant of Thermostable P-Nitrophenylphosphatase From Bacillus Stearothermophilus

Enzymatic activity of Structure of the H170Y Mutant of Thermostable P-Nitrophenylphosphatase From Bacillus Stearothermophilus

All present enzymatic activity of Structure of the H170Y Mutant of Thermostable P-Nitrophenylphosphatase From Bacillus Stearothermophilus:
3.1.3.1;

Protein crystallography data

The structure of Structure of the H170Y Mutant of Thermostable P-Nitrophenylphosphatase From Bacillus Stearothermophilus, PDB code: 4o8c was solved by T.Shen, Z.Guo, F.Wang, W.Gong, C.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.51 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.754, 83.245, 176.051, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 21.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the H170Y Mutant of Thermostable P-Nitrophenylphosphatase From Bacillus Stearothermophilus (pdb code 4o8c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the H170Y Mutant of Thermostable P-Nitrophenylphosphatase From Bacillus Stearothermophilus, PDB code: 4o8c:

Magnesium binding site 1 out of 1 in 4o8c

Go back to Magnesium Binding Sites List in 4o8c
Magnesium binding site 1 out of 1 in the Structure of the H170Y Mutant of Thermostable P-Nitrophenylphosphatase From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the H170Y Mutant of Thermostable P-Nitrophenylphosphatase From Bacillus Stearothermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:23.9
occ:1.00
 OD2 B:ASP10 2.2 22.5 1.0
O B:ASP12 2.3 28.1 1.0
O2 B:SO4302 2.4 28.2 1.0
OD1 B:ASP206 2.5 27.3 1.0
O B:HOH445 2.5 25.0 1.0
OD1 B:ASP10 2.6 22.0 1.0
O B:HOH440 2.6 37.7 1.0
CG B:ASP10 2.7 23.1 1.0
OD2 B:ASP211 3.4 24.1 1.0
C B:ASP12 3.5 22.9 1.0
CG B:ASP206 3.6 30.2 1.0
S B:SO4302 3.7 37.9 1.0
HG1 B:THR14 4.0 29.2 1.0
HB3 B:ASP12 4.0 47.7 1.0
OD2 B:ASP206 4.0 30.3 1.0
H B:ASP12 4.1 34.4 1.0
HZ1 B:LYS181 4.1 20.1 1.0
N B:ASP12 4.1 28.6 1.0
CB B:ASP10 4.1 20.3 1.0
OD1 B:ASP211 4.1 26.2 1.0
HZ2 B:LYS181 4.2 20.1 1.0
H B:ASP206 4.2 22.4 1.0
CG B:ASP211 4.2 26.7 1.0
O1 B:SO4302 4.2 28.6 1.0
O4 B:SO4302 4.2 24.2 1.0
CA B:ASP12 4.2 33.2 1.0
HB2 B:ASN207 4.3 21.4 1.0
HA3 B:GLY13 4.3 28.2 1.0
O B:HOH490 4.3 42.4 1.0
HG1 B:THR210 4.4 23.6 1.0
HB3 B:ASP10 4.4 24.4 1.0
H B:LEU11 4.4 27.4 1.0
HB2 B:ASP10 4.4 24.4 1.0
HB3 B:ASN207 4.5 21.4 1.0
N B:GLY13 4.5 19.2 1.0
NZ B:LYS181 4.6 16.8 1.0
CB B:ASP12 4.6 39.8 1.0
H B:ASN207 4.6 25.8 1.0
C B:LEU11 4.7 28.7 1.0
OG1 B:THR14 4.7 24.3 1.0
N B:LEU11 4.8 22.8 1.0
O3 B:SO4302 4.8 50.3 1.0
CA B:GLY13 4.8 23.5 1.0
CB B:ASN207 4.8 17.8 1.0
CB B:ASP206 4.8 29.0 1.0
HB3 B:ASP206 4.9 34.9 1.0
HB2 B:ASP12 4.9 47.7 1.0
N B:ASP206 5.0 18.7 1.0
H B:THR14 5.0 33.2 1.0
OG1 B:THR210 5.0 19.6 1.0

Reference:

T.Shen, Z.Guo, C.Ji. Structure of A HIS170TYR Mutant of Thermostable Pnppase From Geobacillus Stearothermophilus Acta Crystallogr.,Sect.F V. 70 697 2014.
ISSN: ESSN 1744-3091
DOI: 10.1107/S2053230X14007341
Page generated: Mon Aug 11 21:26:50 2025

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