Magnesium in PDB 5d6g: Crystal Structure of Fragment of Ribosomal Protein P0 in Complex with 74NT 23S Rna From Methanococcus Jannaschii

The structure of Crystal Structure of Fragment of Ribosomal Protein P0 in Complex with 74NT 23S Rna From Methanococcus Jannaschii, PDB code: 5d6g was solved by A.G.Gabdulkhakov, I.V.Mitroshin, M.B.Garber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.83 / 3.30
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	104.230, 108.310, 112.950, 90.00, 90.00, 90.00
R / Rfree (%)	24.5 / 29.9

The binding sites of Magnesium atom in the Crystal Structure of Fragment of Ribosomal Protein P0 in Complex with 74NT 23S Rna From Methanococcus Jannaschii (pdb code 5d6g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Fragment of Ribosomal Protein P0 in Complex with 74NT 23S Rna From Methanococcus Jannaschii, PDB code: 5d6g:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Fragment of Ribosomal Protein P0 in Complex with 74NT 23S Rna From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Fragment of Ribosomal Protein P0 in Complex with 74NT 23S Rna From Methanococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ 0:Mg1301 b:0.5 occ:1.00 O 0:HOH1404 1.8 78.8 1.0 O4 0:U1191 2.2 0.3 1.0 O 0:HOH1402 2.5 37.4 1.0 O 0:HOH1403 2.7 60.9 1.0 O 0:HOH1405 2.9 63.5 1.0 O4 0:U1192 3.0 0.8 1.0 C4 0:U1191 3.0 0.9 1.0 C5 0:U1191 3.4 0.5 1.0 OP1 0:G1197 3.9 0.7 1.0 C4 0:U1192 4.0 0.9 1.0 N3 0:U1191 4.2 0.7 1.0 C5 0:U1192 4.5 0.8 1.0 N6 0:A1167 4.5 0.3 1.0 O 0:HOH1401 4.5 61.7 1.0 OP2 0:A1196 4.6 0.5 1.0 O4 0:U1193 4.6 0.8 1.0 C6 0:U1191 4.7 0.7 1.0 N3 0:U1193 4.7 0.1 1.0 C2 0:A1196 4.7 0.4 1.0 C4 0:U1193 4.8 0.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Fragment of Ribosomal Protein P0 in Complex with 74NT 23S Rna From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Fragment of Ribosomal Protein P0 in Complex with 74NT 23S Rna From Methanococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ 0:Mg1302 b:98.3 occ:1.00 O4 0:U1204 1.8 0.1 1.0 OP2 0:A1183 2.4 0.4 1.0 O6 0:G1203 3.0 0.3 1.0 C4 0:U1204 3.0 0.2 1.0 OP2 0:C1207 3.7 0.1 1.0 P 0:A1183 3.7 0.7 1.0 C6 0:G1203 3.8 0.3 1.0 N3 0:U1204 3.9 0.8 1.0 N1 0:G1203 4.0 0.2 1.0 C5 0:U1204 4.0 0.2 1.0 C3' 0:C1182 4.1 0.9 1.0 C2' 0:C1182 4.2 0.4 1.0 O3' 0:C1182 4.3 0.1 1.0 OP1 0:A1183 4.4 0.9 1.0 N1 0:C1182 4.7 0.9 1.0 C6 0:C1182 4.7 0.2 1.0 P 0:C1207 4.7 0.9 1.0 OP1 0:C1207 4.8 0.7 1.0 O5' 0:A1183 5.0 0.7 1.0 C5 0:C1182 5.0 0.1 1.0 C2 0:C1182 5.0 0.9 1.0 C5 0:G1203 5.0 0.5 1.0

A.G.Gabdulkhakov, I.V.Mitroshin, M.B.Garber. Crystal Structure of Fragment of Ribosomal Protein P0 in Complex with 74NT 23S Rna From Methanococcus Jannaschii To Be Published.