Magnesium in PDB 5drz: Crystal Structure of Anti-Hiv-1 Antibody F240 Fab in Complex with GP41 Peptide

The structure of Crystal Structure of Anti-Hiv-1 Antibody F240 Fab in Complex with GP41 Peptide, PDB code: 5drz was solved by N.Gohain, W.D.Tolbert, M.Pazgier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	168.79 / 2.54
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.317, 60.488, 169.228, 90.00, 94.13, 90.00
R / Rfree (%)	20.4 / 25.9

The binding sites of Magnesium atom in the Crystal Structure of Anti-Hiv-1 Antibody F240 Fab in Complex with GP41 Peptide (pdb code 5drz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Anti-Hiv-1 Antibody F240 Fab in Complex with GP41 Peptide, PDB code: 5drz:

Magnesium binding site 1 out of 1 in the Crystal Structure of Anti-Hiv-1 Antibody F240 Fab in Complex with GP41 Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Anti-Hiv-1 Antibody F240 Fab in Complex with GP41 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg301 b:59.7 occ:1.00 O L:PRO80 2.6 29.3 1.0 OG L:SER171 2.7 37.4 1.0 O L:ASP167 2.8 33.1 1.0 C L:PRO80 3.4 30.4 1.0 CB L:ALA83 3.4 29.4 1.0 CA L:PRO80 3.4 31.4 1.0 CB L:SER171 3.4 37.1 1.0 CA L:SER171 3.4 36.5 1.0 CD1 L:ILE106 3.6 33.9 1.0 CB L:PRO80 3.7 32.3 1.0 C L:ASP167 3.9 34.0 1.0 N L:SER171 4.0 37.1 1.0 CG L:GLN166 4.0 31.4 1.0 CD L:GLN166 4.1 31.9 1.0 OE1 L:GLN166 4.2 31.1 1.0 CG1 L:ILE106 4.4 33.2 1.0 CA L:SER168 4.4 38.0 1.0 CB L:ILE106 4.4 32.9 1.0 CB L:GLN166 4.5 30.4 1.0 N L:SER168 4.5 35.9 1.0 C L:SER168 4.6 39.3 1.0 NE2 L:GLN166 4.6 33.1 1.0 N L:GLU81 4.6 30.5 1.0 CA L:ALA83 4.7 29.2 1.0 O L:SER168 4.7 38.7 1.0 C L:SER171 4.7 35.9 1.0 N L:ALA83 4.7 28.9 1.0 C L:GLN166 4.8 30.6 1.0 N L:PRO80 4.8 32.4 1.0 CG2 L:ILE106 4.8 33.5 1.0 N L:ASP167 4.8 31.4 1.0 O L:GLN166 4.8 29.6 1.0 CG L:PRO80 4.9 33.6 1.0 CA L:ASP167 5.0 32.9 1.0

N.Gohain, W.D.Tolbert, C.Orlandi, J.Richard, S.Ding, X.Chen, D.A.Bonsor, E.J.Sundberg, W.Lu, K.Ray, A.Finzi, G.K.Lewis, M.Pazgier. Molecular Basis For Epitope Recognition By Non-Neutralizing Anti-GP41 Antibody F240. Sci Rep V. 6 36685 2016.
ISSN: ESSN 2045-2322
PubMed: 27827447
DOI: 10.1038/SREP36685