Magnesium in PDB 5h6o: Porphobilinogen Deaminase From Vibrio Cholerae

All present enzymatic activity of Porphobilinogen Deaminase From Vibrio Cholerae:
2.5.1.61;

The structure of Porphobilinogen Deaminase From Vibrio Cholerae, PDB code: 5h6o was solved by T.Funamizu, M.Chen, Y.Tanaka, K.Ishimori, T.Uchida, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.13 / 2.70
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	94.230, 94.230, 165.340, 90.00, 90.00, 90.00
R / Rfree (%)	23.6 / 27.7

The binding sites of Magnesium atom in the Porphobilinogen Deaminase From Vibrio Cholerae (pdb code 5h6o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Porphobilinogen Deaminase From Vibrio Cholerae, PDB code: 5h6o:

Magnesium binding site 1 out of 1 in the Porphobilinogen Deaminase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Porphobilinogen Deaminase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:61.4 occ:1.00 CG1 A:VAL158 3.0 83.7 1.0 CG A:LEU21 3.6 73.0 1.0 N A:VAL158 3.7 78.0 1.0 CD1 A:LEU21 3.7 61.0 1.0 CB A:VAL158 3.9 77.8 1.0 CB A:LEU21 3.9 55.8 1.0 N A:LEU21 3.9 59.3 1.0 CB A:ASN157 4.0 62.1 1.0 CD A:PRO20 4.0 57.4 1.0 CB A:SER19 4.4 51.8 1.0 CA A:VAL158 4.4 56.8 1.0 N A:PRO20 4.4 61.2 1.0 CG A:PRO20 4.5 52.4 1.0 CB A:PRO20 4.5 69.8 1.0 CA A:ASN157 4.5 57.2 1.0 CA A:LEU21 4.6 58.1 1.0 C A:ASN157 4.6 68.0 1.0 OG A:SER19 4.7 64.5 1.0 ND2 A:ASN157 4.8 81.0 1.0 C A:PRO20 4.9 55.6 1.0 CA A:PRO20 4.9 67.7 1.0 CG A:ASN157 4.9 65.8 1.0 CD2 A:LEU21 5.0 64.3 1.0

T.Funamizu, M.Chen, Y.Tanaka, K.Ishimori, T.Uchida. Porphobilinogen Deaminase From Vibrio Cholerae To Be Published.