Magnesium in PDB 5k9t: Seca-N68, A C-Terminal Truncation of the Seca Atpase From E. Coli

The structure of Seca-N68, A C-Terminal Truncation of the Seca Atpase From E. Coli, PDB code: 5k9t was solved by B.H.Shilton, G.C.Vezina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	17.92 / 2.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	67.065, 64.450, 87.967, 90.00, 105.85, 90.00
R / Rfree (%)	19.6 / 25

The binding sites of Magnesium atom in the Seca-N68, A C-Terminal Truncation of the Seca Atpase From E. Coli (pdb code 5k9t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Seca-N68, A C-Terminal Truncation of the Seca Atpase From E. Coli, PDB code: 5k9t:

Magnesium binding site 1 out of 1 in the Seca-N68, A C-Terminal Truncation of the Seca Atpase From E. Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Seca-N68, A C-Terminal Truncation of the Seca Atpase From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:20.0 occ:1.00 O A:HOH1116 2.0 26.6 1.0 O A:HOH1099 2.1 18.7 1.0 O A:HOH1005 2.1 12.4 1.0 O A:HOH1004 2.1 16.1 1.0 O A:HOH1014 2.1 7.5 1.0 O1B A:ADP901 2.2 14.8 1.0 PB A:ADP901 3.6 21.4 1.0 OD2 A:ASP209 3.9 20.9 1.0 OG1 A:THR109 4.0 34.3 1.0 O2B A:ADP901 4.1 24.0 1.0 O A:HOH1023 4.1 18.4 1.0 CA A:GLY510 4.1 24.4 1.0 O A:HOH1083 4.2 30.7 1.0 O1A A:ADP901 4.3 26.5 1.0 O A:GLY510 4.4 29.7 1.0 O2A A:ADP901 4.4 33.3 1.0 OD1 A:ASP209 4.5 28.3 1.0 NH2 A:ARG138 4.5 28.1 1.0 CG A:ASP209 4.6 23.6 1.0 O3A A:ADP901 4.6 18.5 1.0 PA A:ADP901 4.6 24.3 1.0 CE A:LYS108 4.6 21.1 1.0 O3B A:ADP901 4.6 19.0 1.0 OE2 A:GLU210 4.7 40.3 1.0 C A:GLY510 4.8 27.3 1.0 CB A:LYS108 4.8 16.7 1.0 CD A:GLU210 4.9 34.0 1.0

A.K.Yazdi, G.C.Vezina, B.H.Shilton. An Alternate Mode of Oligomerization For E. Coli Seca. Sci Rep V. 7 11747 2017.
ISSN: ESSN 2045-2322
PubMed: 28924213
DOI: 10.1038/S41598-017-11648-5