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Magnesium in PDB 5kf0: Crystal Structure of An Aldedhyde Dehydrogenase From Burkholderia Vietnamiensis

Protein crystallography data

The structure of Crystal Structure of An Aldedhyde Dehydrogenase From Burkholderia Vietnamiensis, PDB code: 5kf0 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.640, 145.080, 170.030, 90.00, 90.00, 90.00
R / Rfree (%) 13.4 / 15.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Aldedhyde Dehydrogenase From Burkholderia Vietnamiensis (pdb code 5kf0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of An Aldedhyde Dehydrogenase From Burkholderia Vietnamiensis, PDB code: 5kf0:

Magnesium binding site 1 out of 1 in 5kf0

Go back to Magnesium Binding Sites List in 5kf0
Magnesium binding site 1 out of 1 in the Crystal Structure of An Aldedhyde Dehydrogenase From Burkholderia Vietnamiensis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Aldedhyde Dehydrogenase From Burkholderia Vietnamiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:14.1
occ:1.00
OE2 A:GLU85 1.9 32.3 1.0
ND1 A:HIS0 2.1 48.2 1.0
NE2 A:HIS-2 2.1 43.3 1.0
CD A:GLU85 2.7 33.9 1.0
OE1 A:GLU85 2.8 32.3 1.0
CE1 A:HIS-2 3.0 46.8 1.0
CE1 A:HIS0 3.1 47.4 1.0
CG A:HIS0 3.1 49.8 1.0
CD2 A:HIS-2 3.2 45.9 1.0
CB A:HIS0 3.4 44.1 1.0
CA A:HIS0 3.8 42.9 1.0
CG A:GLU85 4.1 23.6 1.0
ND1 A:HIS-2 4.1 49.4 1.0
NE2 A:HIS0 4.2 49.7 1.0
CD2 A:HIS0 4.2 49.1 1.0
CG A:HIS-2 4.3 49.2 1.0
N A:HIS0 4.4 44.8 1.0
O A:HOH618 4.9 40.2 1.0

Reference:

J.Abendroth, D.Fox Iii, D.D.Lorimer, T.E.Edwards. Crystal Structure of An Aldedhyde Dehydrogenase From Burkholderia Vietnamiensis To Be Published.
Page generated: Tue Aug 12 13:06:06 2025

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