Atomistry » Magnesium » PDB 5si7-5sjb » 5sim
Atomistry »
  Magnesium »
    PDB 5si7-5sjb »
      5sim »

Magnesium in PDB 5sim: Crystal Structure of Human Phosphodiesterase 10 in Complex with 2- Methyl-4-(2-Methylpyrrolidine-1-Carbonyl)-N-(2-Phenylimidazo[1,2- A]Pyridin-7-Yl)Pyrazole-3-Carboxamide

Enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2- Methyl-4-(2-Methylpyrrolidine-1-Carbonyl)-N-(2-Phenylimidazo[1,2- A]Pyridin-7-Yl)Pyrazole-3-Carboxamide

All present enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2- Methyl-4-(2-Methylpyrrolidine-1-Carbonyl)-N-(2-Phenylimidazo[1,2- A]Pyridin-7-Yl)Pyrazole-3-Carboxamide:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2- Methyl-4-(2-Methylpyrrolidine-1-Carbonyl)-N-(2-Phenylimidazo[1,2- A]Pyridin-7-Yl)Pyrazole-3-Carboxamide, PDB code: 5sim was solved by C.Joseph, J.Benz, A.Flohr, J.Peters, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.88 / 1.75
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 141.935, 141.935, 141.935, 90, 90, 90
R / Rfree (%) 17.3 / 20

Other elements in 5sim:

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2- Methyl-4-(2-Methylpyrrolidine-1-Carbonyl)-N-(2-Phenylimidazo[1,2- A]Pyridin-7-Yl)Pyrazole-3-Carboxamide also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2- Methyl-4-(2-Methylpyrrolidine-1-Carbonyl)-N-(2-Phenylimidazo[1,2- A]Pyridin-7-Yl)Pyrazole-3-Carboxamide (pdb code 5sim). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2- Methyl-4-(2-Methylpyrrolidine-1-Carbonyl)-N-(2-Phenylimidazo[1,2- A]Pyridin-7-Yl)Pyrazole-3-Carboxamide, PDB code: 5sim:

Magnesium binding site 1 out of 1 in 5sim

Go back to Magnesium Binding Sites List in 5sim
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2- Methyl-4-(2-Methylpyrrolidine-1-Carbonyl)-N-(2-Phenylimidazo[1,2- A]Pyridin-7-Yl)Pyrazole-3-Carboxamide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2- Methyl-4-(2-Methylpyrrolidine-1-Carbonyl)-N-(2-Phenylimidazo[1,2- A]Pyridin-7-Yl)Pyrazole-3-Carboxamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:15.6
occ:1.00
 O A:HOH1005 2.0 23.2 1.0
OD1 A:ASP564 2.1 19.8 1.0
O A:HOH1060 2.1 26.3 1.0
O A:HOH980 2.1 21.7 1.0
O A:HOH1034 2.1 20.9 1.0
O A:HOH973 2.2 21.9 1.0
CG A:ASP564 3.1 19.7 1.0
OD2 A:ASP564 3.5 20.8 1.0
ZN A:ZN801 3.7 24.8 1.0
O A:HOH1097 3.9 36.8 1.0
OE2 A:GLU592 4.0 24.9 1.0
NE2 A:HIS595 4.0 19.9 1.0
O A:HOH1063 4.1 28.9 1.0
O A:HOH1071 4.2 33.1 1.0
CD2 A:HIS563 4.2 19.6 1.0
OG1 A:THR633 4.2 24.3 1.0
CD2 A:HIS567 4.3 24.7 1.0
CD2 A:HIS595 4.3 21.0 1.0
O A:HIS563 4.3 20.8 1.0
OD2 A:ASP674 4.4 27.6 1.0
CB A:ASP564 4.4 20.3 1.0
NE2 A:HIS567 4.5 24.6 1.0
O A:THR633 4.5 24.3 1.0
CD2 A:HIS525 4.5 24.1 1.0
NE2 A:HIS525 4.6 24.9 1.0
NE2 A:HIS563 4.6 18.9 1.0
CB A:THR633 4.7 24.3 1.0
CA A:ASP564 4.8 20.2 1.0
CG A:GLU592 4.8 22.9 1.0
CD A:GLU592 4.9 24.2 1.0

Reference:

A.Flohr, D.Schlatter, B.Kuhn, M.G.Rudolph. Crystal Structure of A Human Phosphodiesterase 10 Complex To Be Published.
Page generated: Tue Aug 12 19:59:10 2025

Last articles

Mg in 7C8X
Mg in 7CAS
Mg in 7CAG
Mg in 7C91
Mg in 7C9Q
Mg in 7C97
Mg in 7C52
Mg in 7C8Q
Mg in 7C7J
Mg in 7C7A
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy