Magnesium in PDB 5syc: Near-Atomic Resolution Cryo-Em Reconstruction of Peloruside-Stabilized Microtubule

The binding sites of Magnesium atom in the Near-Atomic Resolution Cryo-Em Reconstruction of Peloruside-Stabilized Microtubule (pdb code 5syc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Near-Atomic Resolution Cryo-Em Reconstruction of Peloruside-Stabilized Microtubule, PDB code: 5syc:

Magnesium binding site 1 out of 1 in the Near-Atomic Resolution Cryo-Em Reconstruction of Peloruside-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Near-Atomic Resolution Cryo-Em Reconstruction of Peloruside-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:12.8 occ:1.00 O1B A:GTP501 1.9 20.0 1.0 OE2 A:GLU71 2.0 36.8 1.0 O1G A:GTP501 2.6 20.0 1.0 CD A:GLU71 3.0 37.0 1.0 PB A:GTP501 3.2 20.0 1.0 CG A:GLU71 3.3 36.8 1.0 PG A:GTP501 3.3 20.0 1.0 O3B A:GTP501 3.5 20.0 1.0 O2G A:GTP501 3.5 20.0 1.0 OD1 A:ASP69 3.8 30.9 1.0 CB A:GLN11 4.0 21.3 1.0 N A:GLN11 4.0 21.4 1.0 O3A A:GTP501 4.1 20.0 1.0 OE1 A:GLU71 4.1 37.1 1.0 NZ B:LYS254 4.2 16.9 1.0 O2B A:GTP501 4.3 20.0 1.0 OD2 A:ASP69 4.4 31.3 1.0 OD2 A:ASP98 4.4 39.8 1.0 CB A:ASP98 4.4 39.3 1.0 C A:GLY10 4.5 21.9 1.0 CG A:ASP69 4.5 30.9 1.0 CA A:GLN11 4.5 21.1 1.0 OG1 A:THR145 4.6 22.4 1.0 CB A:GLU71 4.7 36.0 1.0 O3G A:GTP501 4.7 20.0 1.0 CA A:GLY10 4.9 22.2 1.0 O1A A:GTP501 4.9 20.0 1.0 PA A:GTP501 5.0 20.0 1.0 CG A:ASP98 5.0 39.8 1.0 OE1 A:GLN11 5.0 21.8 1.0

E.H.Kellogg, N.M.Hejab, S.Howes, P.Northcote, J.H.Miller, J.F.Diaz, K.H.Downing, E.Nogales. Insights Into the Distinct Mechanisms of Action of Taxane and Non-Taxane Microtubule Stabilizers From Cryo-Em Structures. J. Mol. Biol. V. 429 633 2017.
ISSN: ESSN 1089-8638
PubMed: 28104363
DOI: 10.1016/J.JMB.2017.01.001