Magnesium in PDB 5sye: Near-Atomic Resolution Cryo-Em Reconstruction of Doubly Bound Taxol- and Peloruside-Stabilized Microtubule

The binding sites of Magnesium atom in the Near-Atomic Resolution Cryo-Em Reconstruction of Doubly Bound Taxol- and Peloruside-Stabilized Microtubule (pdb code 5sye). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Near-Atomic Resolution Cryo-Em Reconstruction of Doubly Bound Taxol- and Peloruside-Stabilized Microtubule, PDB code: 5sye:

Magnesium binding site 1 out of 1 in the Near-Atomic Resolution Cryo-Em Reconstruction of Doubly Bound Taxol- and Peloruside-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Near-Atomic Resolution Cryo-Em Reconstruction of Doubly Bound Taxol- and Peloruside-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:12.8 occ:1.00 OE1 A:GLU71 1.9 34.5 1.0 O1B A:GTP501 2.1 20.0 1.0 OD1 A:ASP98 2.2 40.8 1.0 O1G A:GTP501 2.4 20.0 1.0 CD A:GLU71 3.1 34.6 1.0 PG A:GTP501 3.3 20.0 1.0 CG A:ASP98 3.3 41.5 1.0 PB A:GTP501 3.3 20.0 1.0 CB A:GLU71 3.4 34.0 1.0 O2G A:GTP501 3.4 20.0 1.0 O3B A:GTP501 3.6 20.0 1.0 CG A:GLU71 3.6 34.5 1.0 OD2 A:ASP98 3.8 41.2 1.0 OD1 A:ASP69 3.9 28.4 1.0 CB A:GLN11 4.0 19.3 1.0 OE2 A:GLU71 4.1 34.6 1.0 O3A A:GTP501 4.2 20.0 1.0 OE1 A:GLN11 4.3 20.0 1.0 NZ B:LYS254 4.3 10.1 1.0 N A:GLN11 4.4 19.4 1.0 CB A:ASP98 4.5 41.8 1.0 O2B A:GTP501 4.5 20.0 1.0 OG1 A:THR145 4.5 18.2 1.0 OD2 A:ASP69 4.6 28.1 1.0 CA A:GLU71 4.6 32.9 1.0 O3G A:GTP501 4.6 20.0 1.0 CG A:ASP69 4.7 28.2 1.0 CA A:GLN11 4.7 19.1 1.0 N A:GLU71 4.8 31.4 1.0

E.H.Kellogg, N.M.Hejab, S.Howes, P.Northcote, J.H.Miller, J.F.Diaz, K.H.Downing, E.Nogales. Insights Into the Distinct Mechanisms of Action of Taxane and Non-Taxane Microtubule Stabilizers From Cryo-Em Structures. J. Mol. Biol. V. 429 633 2017.
ISSN: ESSN 1089-8638
PubMed: 28104363
DOI: 10.1016/J.JMB.2017.01.001