Magnesium in PDB 5szk: Structure of Human N-Terminally Engineered RAB1B in Complex with the Bmerb Domain of Mical-Cl

The structure of Structure of Human N-Terminally Engineered RAB1B in Complex with the Bmerb Domain of Mical-Cl, PDB code: 5szk was solved by A.Rai, A.Oprisko, J.Campos, Y.Fu, T.Friese, A.Itzen, R.S.Goody, E.M.Gazdag, M.P.Mueller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.80 / 2.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	62.230, 117.030, 139.430, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 26.1

The binding sites of Magnesium atom in the Structure of Human N-Terminally Engineered RAB1B in Complex with the Bmerb Domain of Mical-Cl (pdb code 5szk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Human N-Terminally Engineered RAB1B in Complex with the Bmerb Domain of Mical-Cl, PDB code: 5szk:

Magnesium binding site 1 out of 1 in the Structure of Human N-Terminally Engineered RAB1B in Complex with the Bmerb Domain of Mical-Cl


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Human N-Terminally Engineered RAB1B in Complex with the Bmerb Domain of Mical-Cl within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:64.8 occ:1.00 O2G B:GNP302 2.0 73.1 1.0 O2B B:GNP302 2.1 73.4 1.0 OG B:SER22 2.2 57.0 1.0 OG1 B:THR40 2.3 69.5 1.0 CB B:SER22 3.2 50.5 1.0 PG B:GNP302 3.2 68.0 1.0 PB B:GNP302 3.2 68.4 1.0 N3B B:GNP302 3.4 68.9 1.0 N B:THR40 3.5 52.9 1.0 O B:ILE38 3.5 68.8 1.0 O2A B:GNP302 3.5 74.5 1.0 CB B:THR40 3.6 57.4 1.0 O3A B:GNP302 3.9 75.3 1.0 PA B:GNP302 3.9 74.9 1.0 O3G B:GNP302 4.0 64.3 1.0 CA B:THR40 4.0 49.5 1.0 O1A B:GNP302 4.1 67.9 1.0 N B:SER22 4.2 53.9 1.0 O1G B:GNP302 4.3 65.4 1.0 C B:SER39 4.3 61.5 1.0 CA B:SER22 4.3 56.5 1.0 CA B:SER39 4.4 64.5 1.0 O1B B:GNP302 4.5 65.9 1.0 C B:ILE38 4.6 69.1 1.0 OD2 B:ASP63 4.7 60.3 1.0 CG2 B:THR40 4.7 51.6 1.0 OD1 B:ASP63 4.9 63.8 1.0 N B:SER39 5.0 66.6 1.0

A.Rai, A.Oprisko, J.Campos, Y.Fu, T.Friese, A.Itzen, R.S.Goody, E.M.Gazdag, M.P.Muller. Bmerb Domains Are Bivalent RAB8 Family Effectors Evolved By Gene Duplication. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27552051
DOI: 10.7554/ELIFE.18675