Magnesium in PDB 5tf0: Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein From Bacteroides Intestinalis

The structure of Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein From Bacteroides Intestinalis, PDB code: 5tf0 was solved by Y.Kim, C.Hatzos-Skintges, M.Endres, G.Babnigg, A.Joachimiak, Mcsg, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.17 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	80.570, 88.447, 107.282, 90.00, 97.89, 90.00
R / Rfree (%)	21.5 / 26.4

The binding sites of Magnesium atom in the Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein From Bacteroides Intestinalis (pdb code 5tf0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein From Bacteroides Intestinalis, PDB code: 5tf0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein From Bacteroides Intestinalis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein From Bacteroides Intestinalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg800 b:18.0 occ:1.00 O A:VAL703 2.0 38.4 1.0 O A:HOH905 2.0 18.5 1.0 OD1 A:ASP701 2.1 38.4 1.0 O A:HOH959 2.2 17.7 1.0 O A:HOH958 2.4 16.7 1.0 O A:HOH1030 2.5 28.9 1.0 CG A:ASP701 3.0 36.6 1.0 OD2 A:ASP701 3.2 37.2 1.0 C A:VAL703 3.2 36.6 1.0 N A:VAL703 3.9 35.7 1.0 OE1 A:GLU750 4.0 29.0 1.0 N A:GLY704 4.1 34.8 1.0 CA A:VAL703 4.1 36.6 1.0 CA A:GLY704 4.1 33.7 1.0 O A:GLU750 4.2 32.8 1.0 O A:PRO751 4.2 34.1 1.0 CB A:GLU750 4.3 30.8 1.0 CB A:ASP701 4.4 33.8 1.0 O A:HOH1065 4.6 20.0 1.0 CB A:VAL703 4.6 37.8 1.0 O A:ASP753 4.6 31.8 1.0 N A:LEU702 4.7 32.6 1.0 C A:ASP701 4.7 32.0 1.0 O A:HOH1015 4.8 23.5 1.0 C A:GLU750 4.8 33.1 1.0 CA A:ASP701 4.8 32.0 1.0 CZ A:PHE754 4.9 32.1 1.0 C A:PRO751 4.9 34.7 1.0 CA A:GLY752 4.9 34.4 1.0 CD A:GLU750 5.0 29.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein From Bacteroides Intestinalis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein From Bacteroides Intestinalis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg800 b:16.0 occ:1.00 OD1 B:ASP701 2.0 32.0 1.0 O B:HOH1010 2.1 16.1 1.0 O B:VAL703 2.1 32.6 1.0 O B:HOH918 2.1 15.3 1.0 O B:HOH910 2.2 23.2 1.0 O B:HOH971 2.3 23.3 1.0 CG B:ASP701 3.0 30.8 1.0 OD2 B:ASP701 3.2 31.1 1.0 C B:VAL703 3.3 31.1 1.0 N B:VAL703 4.0 31.7 1.0 O B:GLU750 4.2 29.2 1.0 CA B:VAL703 4.2 31.6 1.0 O B:PRO751 4.2 30.7 1.0 O B:HOH951 4.2 26.0 1.0 O B:ASP753 4.2 28.4 1.0 N B:GLY704 4.3 29.2 1.0 CB B:ASP701 4.3 29.4 1.0 CA B:GLY704 4.4 27.8 1.0 CB B:GLU750 4.4 28.2 1.0 N B:LEU702 4.5 29.2 1.0 OE1 B:GLU750 4.6 27.9 1.0 C B:ASP701 4.7 28.3 1.0 CB B:VAL703 4.7 32.9 1.0 CA B:ASP701 4.7 28.5 1.0 CZ B:PHE754 4.7 25.6 1.0 N B:ASP753 4.8 30.4 1.0 CA B:GLY752 4.8 31.1 1.0 C B:GLU750 4.9 29.5 1.0 CE1 B:PHE754 4.9 26.6 1.0 C B:GLY752 4.9 30.6 1.0 C B:LEU702 5.0 31.2 1.0 C B:PRO751 5.0 30.8 1.0

Y.Kim, C.Hatzos-Skintges, M.Endres, G.Babnigg, A.Joachimiak, Mcsg. Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein From Bacteroides Intestinalis To Be Published 2016.