Magnesium in PDB 5vt0: Escherichia Coli 6S Rna Derivative in Complex with Escherichia Coli Rna Polymerase SIGMA70-Holoenzyme

Enzymatic activity of Escherichia Coli 6S Rna Derivative in Complex with Escherichia Coli Rna Polymerase SIGMA70-Holoenzyme

All present enzymatic activity of Escherichia Coli 6S Rna Derivative in Complex with Escherichia Coli Rna Polymerase SIGMA70-Holoenzyme:
2.7.7.6;

Other elements in 5vt0:

The structure of Escherichia Coli 6S Rna Derivative in Complex with Escherichia Coli Rna Polymerase SIGMA70-Holoenzyme also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Escherichia Coli 6S Rna Derivative in Complex with Escherichia Coli Rna Polymerase SIGMA70-Holoenzyme (pdb code 5vt0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Escherichia Coli 6S Rna Derivative in Complex with Escherichia Coli Rna Polymerase SIGMA70-Holoenzyme, PDB code: 5vt0:

Magnesium binding site 1 out of 1 in 5vt0

Go back to Magnesium Binding Sites List in 5vt0
Magnesium binding site 1 out of 1 in the Escherichia Coli 6S Rna Derivative in Complex with Escherichia Coli Rna Polymerase SIGMA70-Holoenzyme


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Escherichia Coli 6S Rna Derivative in Complex with Escherichia Coli Rna Polymerase SIGMA70-Holoenzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1501

b:38.7
occ:1.00
 OD2 J:ASP464 2.1 41.9 1.0
OD1 J:ASP462 2.4 38.9 1.0
OD1 J:ASP464 2.6 41.9 1.0
CG J:ASP464 2.6 41.9 1.0
OD1 J:ASP460 2.8 39.2 1.0
CG J:ASP462 3.1 38.9 1.0
OD2 J:ASP462 3.1 38.9 1.0
CG J:ASP460 3.6 39.2 1.0
OD2 J:ASP460 3.7 39.2 1.0
CB J:ASP464 4.0 41.9 1.0
NH2 J:ARG425 4.3 38.5 1.0
CB J:ASP462 4.6 38.9 1.0
O J:ASP460 4.6 39.2 1.0
N J:ASP464 4.6 41.9 1.0
CA J:ASP464 4.8 41.9 1.0
N J:ASP462 4.9 38.9 1.0

Reference:

J.Chen, K.M.Wassarman, S.Feng, K.Leon, A.Feklistov, J.T.Winkelman, Z.Li, T.Walz, E.A.Campbell, S.A.Darst. 6S Rna Mimics B-Form Dna to Regulate Escherichia Coli Rna Polymerase. Mol. Cell V. 68 388 2017.
ISSN: ISSN 1097-4164
PubMed: 28988932
DOI: 10.1016/J.MOLCEL.2017.09.006
Page generated: Mon Dec 14 21:19:07 2020

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