Magnesium in PDB 5vvs: Rna Pol II Elongation Complex

All present enzymatic activity of Rna Pol II Elongation Complex:
2.7.7.6;

The structure of Rna Pol II Elongation Complex also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Magnesium atom in the Rna Pol II Elongation Complex (pdb code 5vvs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Pol II Elongation Complex, PDB code: 5vvs:

Magnesium binding site 1 out of 1 in the Rna Pol II Elongation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Pol II Elongation Complex within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg101 b:30.0 occ:1.00 O2' R:A10 2.8 0.5 1.0 OD1 A:ASP481 3.1 0.3 1.0 O3' R:A10 3.2 0.0 1.0 OD2 A:ASP481 3.3 0.6 1.0 CG A:ASP481 3.6 0.6 1.0 NH2 A:ARG446 3.6 0.2 1.0 C3' R:A10 3.8 0.6 1.0 C4' R:A10 3.9 1.0 1.0 C2' R:A10 3.9 0.4 1.0 O A:ASP483 4.4 0.8 1.0 CB A:ASP483 4.5 0.9 1.0 NE A:ARG446 4.5 0.2 1.0 CZ A:ARG446 4.5 0.7 1.0 O4' R:A10 4.7 0.0 1.0 OD2 A:ASP485 4.7 0.9 1.0 C1' R:A10 4.7 0.9 1.0 CB A:ASP485 4.8 0.3 1.0 C5' R:A10 4.9 0.9 1.0

J.Xu, I.Lahiri, W.Wang, A.Wier, M.A.Cianfrocco, J.Chong, A.A.Hare, P.B.Dervan, F.Dimaio, A.E.Leschziner, D.Wang. Structural Basis For the Initiation of Eukaryotic Transcription-Coupled Dna Repair. Nature V. 551 653 2017.
ISSN: ESSN 1476-4687
PubMed: 29168508
DOI: 10.1038/NATURE24658