Magnesium in PDB 5vw6: Nadp+ Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase

All present enzymatic activity of Nadp+ Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase:
1.18.1.2;

The structure of Nadp+ Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase, PDB code: 5vw6 was solved by K.M.Kean, R.A.Carpenter, A.R.Hall, P.A.Karplus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.02 / 1.50
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	58.669, 58.669, 186.734, 90.00, 90.00, 120.00
R / Rfree (%)	14.9 / 18.5

The binding sites of Magnesium atom in the Nadp+ Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase (pdb code 5vw6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Nadp+ Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase, PDB code: 5vw6:

Magnesium binding site 1 out of 1 in the Nadp+ Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nadp+ Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:32.5 occ:1.00 O A:HOH645 2.0 30.0 1.0 O A:HOH861 2.0 30.3 1.0 O A:HOH566 2.0 33.1 1.0 O A:HOH842 2.0 35.9 1.0 O A:HOH828 2.0 38.4 1.0 O A:HOH627 2.1 25.6 1.0 O A:HOH720 3.8 24.6 1.0 HA A:ASP211 3.8 31.4 1.0 O A:HOH542 4.0 44.6 1.0 O A:SER210 4.1 25.0 1.0 HA A:VAL45 4.1 23.2 1.0 O A:HOH614 4.1 38.2 1.0 HB2 A:LEU213 4.1 25.5 1.0 O A:HOH854 4.2 47.6 1.0 O A:HOH747 4.2 32.1 1.0 O A:LEU44 4.2 20.1 1.0 O A:LEU213 4.3 19.6 1.0 O A:ASP211 4.3 22.9 1.0 H A:GLY46 4.5 27.8 1.0 OE2 A:GLU217 4.5 50.7 1.0 CA A:ASP211 4.7 26.1 1.0 C A:ASP211 4.7 24.0 1.0 H A:LEU213 4.7 23.5 1.0 N A:GLY46 4.8 23.1 1.0 O A:HOH644 4.8 17.1 1.0 HA3 A:GLY46 5.0 29.3 1.0 CA A:VAL45 5.0 19.3 1.0 CB A:LEU213 5.0 21.2 1.0

K.M.Kean, R.A.Carpenter, V.Pandini, G.Zanetti, A.R.Hall, R.Faber, A.Aliverti, P.A.Karplus. High-Resolution Studies of Hydride Transfer in the Ferredoxin:Nadp(+) Reductase Superfamily. Febs J. V. 284 3302 2017.
ISSN: ISSN 1742-4658
PubMed: 28783258
DOI: 10.1111/FEBS.14190