Magnesium in PDB 5xdr: Crystal Structure of Human Deah-Box Rna Helicase DHX15 in Complex with Adp

All present enzymatic activity of Crystal Structure of Human Deah-Box Rna Helicase DHX15 in Complex with Adp:
3.6.4.13;

The structure of Crystal Structure of Human Deah-Box Rna Helicase DHX15 in Complex with Adp, PDB code: 5xdr was solved by K.Murakami, K.Nakano, T.Shimizu, U.Ohto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	105.54 / 2.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	81.919, 89.377, 211.078, 90.00, 90.00, 90.00
R / Rfree (%)	22.3 / 26.9

The binding sites of Magnesium atom in the Crystal Structure of Human Deah-Box Rna Helicase DHX15 in Complex with Adp (pdb code 5xdr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Deah-Box Rna Helicase DHX15 in Complex with Adp, PDB code: 5xdr:

Magnesium binding site 1 out of 1 in the Crystal Structure of Human Deah-Box Rna Helicase DHX15 in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Deah-Box Rna Helicase DHX15 in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:53.2 occ:1.00 O A:HOH926 1.9 43.3 1.0 O A:HOH904 1.9 50.9 1.0 OG1 A:THR167 2.0 49.1 1.0 O A:HOH922 2.1 55.9 1.0 O3B A:ADP801 2.3 63.0 1.0 O A:HOH936 2.4 66.6 1.0 CB A:THR167 3.2 51.3 1.0 OD2 A:ASP260 3.2 49.8 1.0 PB A:ADP801 3.4 58.9 1.0 O2B A:ADP801 3.7 62.6 1.0 OE2 A:GLU261 3.8 56.7 1.0 N A:THR167 4.0 54.2 1.0 CG A:ASP260 4.0 49.8 1.0 OD1 A:ASP260 4.1 53.5 1.0 CA A:THR167 4.1 52.7 1.0 O A:SER427 4.1 57.2 1.0 CG2 A:THR167 4.2 52.6 1.0 CD A:GLU261 4.3 54.5 1.0 O1B A:ADP801 4.3 57.0 1.0 O2A A:ADP801 4.3 66.8 1.0 O A:HOH953 4.3 54.5 1.0 CG A:GLU261 4.5 52.4 1.0 O3A A:ADP801 4.6 61.3 1.0 NZ A:LYS166 4.6 56.6 1.0 C A:SER427 4.7 61.8 1.0 O A:THR426 4.7 59.2 1.0 OE1 A:GLN192 4.8 57.4 1.0 CB A:LYS166 4.8 59.9 1.0 CE A:LYS166 4.8 57.2 1.0 PA A:ADP801 4.9 61.8 1.0

K.Murakami, K.Nakano, T.Shimizu, U.Ohto. The Crystal Structure of Human Deah-Box Rna Helicase 15 Reveals A Domain Organization of the Mammalian Deah/Rha Family Acta Crystallogr F Struct V. 73 347 2017BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 28580923
DOI: 10.1107/S2053230X17007336