Magnesium in PDB 6bhj: Structure of Hiv-1 Reverse Transcriptase Bound to A 38-Mer Hairpin Template-Primer Rna-Dna Aptamer

The structure of Structure of Hiv-1 Reverse Transcriptase Bound to A 38-Mer Hairpin Template-Primer Rna-Dna Aptamer, PDB code: 6bhj was solved by F.X.Ruiz, M.T.Miller, S.Tuske, K.Das, E.Arnold, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.69 / 2.81
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	90.055, 127.463, 132.125, 90.00, 101.81, 90.00
R / Rfree (%)	20.3 / 24.4

The binding sites of Magnesium atom in the Structure of Hiv-1 Reverse Transcriptase Bound to A 38-Mer Hairpin Template-Primer Rna-Dna Aptamer (pdb code 6bhj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Hiv-1 Reverse Transcriptase Bound to A 38-Mer Hairpin Template-Primer Rna-Dna Aptamer, PDB code: 6bhj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Hiv-1 Reverse Transcriptase Bound to A 38-Mer Hairpin Template-Primer Rna-Dna Aptamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Hiv-1 Reverse Transcriptase Bound to A 38-Mer Hairpin Template-Primer Rna-Dna Aptamer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:81.2 occ:1.00 OD1 A:ASP549 2.2 0.3 1.0 OD2 A:ASP443 2.5 84.8 1.0 CG A:ASP443 3.4 81.9 1.0 CG A:ASP549 3.4 87.6 1.0 OD1 A:ASP443 3.6 97.3 1.0 OD1 A:ASN498 3.8 66.3 1.0 ND2 A:ASN498 3.9 89.2 1.0 CG A:ASN498 4.2 73.7 1.0 NE2 A:HIS539 4.2 97.1 1.0 OD2 A:ASP549 4.3 86.8 1.0 CB A:ASP549 4.3 73.4 1.0 CE1 A:HIS539 4.3 97.8 1.0 O A:GLY444 4.6 67.9 1.0 CB A:ALA538 4.6 56.6 1.0 CB A:ASP443 4.8 59.0 1.0

Magnesium binding site 2 out of 2 in the Structure of Hiv-1 Reverse Transcriptase Bound to A 38-Mer Hairpin Template-Primer Rna-Dna Aptamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Hiv-1 Reverse Transcriptase Bound to A 38-Mer Hairpin Template-Primer Rna-Dna Aptamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg603 b:77.7 occ:1.00 OD1 C:ASP549 2.3 81.1 1.0 OD2 C:ASP443 2.4 68.8 1.0 CG C:ASP443 3.2 57.9 1.0 OD1 C:ASP443 3.3 58.3 1.0 CG C:ASP549 3.5 70.8 1.0 O C:GLY444 3.6 68.2 1.0 OD2 C:ASP549 4.3 73.0 1.0 OD1 C:ASN498 4.4 68.0 1.0 O C:SER553 4.5 97.4 1.0 CB C:ASP549 4.5 60.1 1.0 NE2 C:HIS539 4.6 79.2 1.0 CE1 C:HIS539 4.6 72.5 1.0 CB C:ASP443 4.6 42.0 1.0 ND2 C:ASN498 4.7 61.9 1.0 C C:GLY444 4.8 56.2 1.0 CG C:ASN498 4.9 60.0 1.0 CA C:ASP549 4.9 66.4 1.0 CG2 C:VAL552 5.0 70.0 1.0

S.Tuske, J.Zheng, E.D.Olson, F.X.Ruiz, B.D.Pascal, J.D.Bauman, K.Das, J.J.Destefano, K.Musier-Forsyth, P.R.Griffin, E.Arnold. Structure of Hiv-1 Reverse Transcriptase Bound to A 38-Mer Hairpin Template-Primer Rna-Dna Aptamer To Be Published.