Magnesium in PDB 6bno: Structure of Bare Actin Filament

The binding sites of Magnesium atom in the Structure of Bare Actin Filament (pdb code 6bno). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of Bare Actin Filament, PDB code: 6bno:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Structure of Bare Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bare Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:0.0 occ:1.00 OE1 A:GLN137 1.9 0.0 1.0 OD1 A:ASP154 1.9 0.0 1.0 OD2 A:ASP154 1.9 0.0 1.0 CG A:ASP154 2.3 0.0 1.0 O1B A:ADP402 2.4 0.0 1.0 CD A:GLN137 3.0 0.0 1.0 OG A:SER14 3.4 0.0 1.0 NE2 A:GLN137 3.5 0.0 1.0 PB A:ADP402 3.7 0.0 1.0 CB A:ASP154 3.9 0.0 1.0 O3B A:ADP402 4.1 0.0 1.0 CG A:GLN137 4.2 0.0 1.0 CB A:GLN137 4.4 0.0 1.0 O3A A:ADP402 4.7 0.0 1.0 O2B A:ADP402 4.8 0.0 1.0 CB A:SER14 4.8 0.0 1.0 N A:SER14 4.8 0.0 1.0 O A:VAL159 4.9 0.0 1.0 C A:ASP154 5.0 0.0 1.0 CA A:ASP154 5.0 0.0 1.0

Magnesium binding site 2 out of 8 in the Structure of Bare Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Bare Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:0.0 occ:1.00 OE1 B:GLN137 1.8 0.0 1.0 OD1 B:ASP154 1.9 0.0 1.0 OD2 B:ASP154 1.9 0.0 1.0 CG B:ASP154 2.3 0.0 1.0 O1B B:ADP402 2.4 0.0 1.0 CD B:GLN137 2.9 0.0 1.0 NE2 B:GLN137 3.4 0.0 1.0 PB B:ADP402 3.7 0.0 1.0 CB B:ASP154 3.8 0.0 1.0 CG B:GLN137 4.1 0.0 1.0 O3B B:ADP402 4.1 0.0 1.0 CB B:GLN137 4.4 0.0 1.0 CE1 B:HIS161 4.6 0.0 1.0 O B:VAL159 4.6 0.0 1.0 O3A B:ADP402 4.7 0.0 1.0 O2B B:ADP402 4.8 0.0 1.0 O B:ASP154 4.8 0.0 1.0 C B:ASP154 4.8 0.0 1.0 CA B:ASP154 4.9 0.0 1.0 N B:GLY156 5.0 0.0 1.0

Magnesium binding site 3 out of 8 in the Structure of Bare Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Bare Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:0.0 occ:1.00 OE1 C:GLN137 1.8 0.0 1.0 O1B C:ADP402 2.4 0.0 1.0 CD C:GLN137 2.9 0.0 1.0 OG C:SER14 3.1 0.0 1.0 NE2 C:GLN137 3.5 0.0 1.0 PB C:ADP402 3.7 0.0 1.0 OD2 C:ASP154 3.9 0.0 1.0 CG2 C:VAL159 3.9 0.0 1.0 O3B C:ADP402 4.1 0.0 1.0 CG C:GLN137 4.2 0.0 1.0 NE2 C:HIS161 4.2 0.0 1.0 CB C:SER14 4.5 0.0 1.0 CB C:GLN137 4.5 0.0 1.0 O C:VAL159 4.6 0.0 1.0 O3A C:ADP402 4.7 0.0 1.0 O2B C:ADP402 4.8 0.0 1.0 CA C:GLY156 4.9 0.0 1.0 N C:SER14 4.9 0.0 1.0 N C:GLY156 5.0 0.0 1.0 CD2 C:HIS161 5.0 0.0 1.0

Magnesium binding site 4 out of 8 in the Structure of Bare Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Bare Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:0.0 occ:1.00 OE1 D:GLN137 1.8 0.0 1.0 O1B D:ADP402 2.4 0.0 1.0 CD D:GLN137 2.9 0.0 1.0 NE2 D:GLN137 3.3 0.0 1.0 PB D:ADP402 3.7 0.0 1.0 OG D:SER14 4.0 0.0 1.0 O3B D:ADP402 4.1 0.0 1.0 OD2 D:ASP154 4.2 0.0 1.0 CG D:GLN137 4.2 0.0 1.0 NE2 D:HIS161 4.4 0.0 1.0 O D:VAL159 4.5 0.0 1.0 CB D:GLN137 4.6 0.0 1.0 O3A D:ADP402 4.7 0.0 1.0 CA D:GLY156 4.7 0.0 1.0 O2B D:ADP402 4.8 0.0 1.0 N D:GLY156 4.8 0.0 1.0 N D:SER14 5.0 0.0 1.0

Magnesium binding site 5 out of 8 in the Structure of Bare Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Bare Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg401 b:0.0 occ:1.00 OE1 E:GLN137 1.8 0.0 1.0 OD1 E:ASP154 1.9 0.0 1.0 OD2 E:ASP154 1.9 0.0 1.0 CG E:ASP154 2.3 0.0 1.0 O1B E:ADP402 2.4 0.0 1.0 CD E:GLN137 2.9 0.0 1.0 OG E:SER14 3.0 0.0 1.0 NE2 E:GLN137 3.4 0.0 1.0 PB E:ADP402 3.7 0.0 1.0 CB E:ASP154 3.9 0.0 1.0 O3B E:ADP402 4.1 0.0 1.0 CG E:GLN137 4.2 0.0 1.0 CB E:SER14 4.4 0.0 1.0 CB E:GLN137 4.6 0.0 1.0 N E:SER14 4.6 0.0 1.0 CE1 E:HIS161 4.7 0.0 1.0 O3A E:ADP402 4.7 0.0 1.0 CG1 E:VAL159 4.7 0.0 1.0 O E:VAL159 4.7 0.0 1.0 O2B E:ADP402 4.8 0.0 1.0 O E:ASP154 4.9 0.0 1.0 C E:ASP154 4.9 0.0 1.0 N E:GLY156 5.0 0.0 1.0 CA E:ASP154 5.0 0.0 1.0

Magnesium binding site 6 out of 8 in the Structure of Bare Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Bare Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg401 b:0.0 occ:1.00 OE1 F:GLN137 1.9 0.0 1.0 NE2 F:HIS161 2.3 0.0 1.0 O1B F:ADP402 2.4 0.0 1.0 CD F:GLN137 3.0 0.0 1.0 CE1 F:HIS161 3.3 0.0 1.0 CD2 F:HIS161 3.4 0.0 1.0 NE2 F:GLN137 3.4 0.0 1.0 OG F:SER14 3.5 0.0 1.0 PB F:ADP402 3.7 0.0 1.0 O3B F:ADP402 4.1 0.0 1.0 OD2 F:ASP154 4.1 0.0 1.0 CG F:GLN137 4.3 0.0 1.0 O F:VAL159 4.3 0.0 1.0 ND1 F:HIS161 4.5 0.0 1.0 CG F:HIS161 4.6 0.0 1.0 O3A F:ADP402 4.7 0.0 1.0 CG2 F:VAL159 4.7 0.0 1.0 O2B F:ADP402 4.8 0.0 1.0 CB F:GLN137 4.8 0.0 1.0 CB F:SER14 4.8 0.0 1.0

Magnesium binding site 7 out of 8 in the Structure of Bare Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Bare Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg401 b:0.0 occ:1.00 OE1 G:GLN137 1.8 0.0 1.0 OD1 G:ASP154 1.9 0.0 1.0 OD2 G:ASP154 1.9 0.0 1.0 CG G:ASP154 2.3 0.0 1.0 O1B G:ADP402 2.4 0.0 1.0 CD G:GLN137 2.9 0.0 1.0 OG G:SER14 3.0 0.0 1.0 NE2 G:GLN137 3.5 0.0 1.0 PB G:ADP402 3.7 0.0 1.0 CB G:ASP154 3.8 0.0 1.0 O3B G:ADP402 4.1 0.0 1.0 CG G:GLN137 4.1 0.0 1.0 CB G:SER14 4.4 0.0 1.0 CB G:GLN137 4.4 0.0 1.0 O G:VAL159 4.5 0.0 1.0 N G:SER14 4.7 0.0 1.0 O3A G:ADP402 4.7 0.0 1.0 CE1 G:HIS161 4.7 0.0 1.0 O2B G:ADP402 4.8 0.0 1.0 CG1 G:VAL159 4.8 0.0 1.0 N G:GLY156 4.8 0.0 1.0 C G:ASP154 4.9 0.0 1.0 O G:ASP154 4.9 0.0 1.0 CA G:ASP154 4.9 0.0 1.0

Magnesium binding site 8 out of 8 in the Structure of Bare Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Bare Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg401 b:0.0 occ:1.00 OE1 H:GLN137 1.8 0.0 1.0 OD1 H:ASP154 1.9 0.0 1.0 OD2 H:ASP154 1.9 0.0 1.0 CG H:ASP154 2.3 0.0 1.0 O1B H:ADP402 2.4 0.0 1.0 CD H:GLN137 2.9 0.0 1.0 OG H:SER14 3.1 0.0 1.0 NE2 H:GLN137 3.4 0.0 1.0 PB H:ADP402 3.7 0.0 1.0 CB H:ASP154 3.9 0.0 1.0 O3B H:ADP402 4.1 0.0 1.0 CG H:GLN137 4.1 0.0 1.0 CB H:SER14 4.5 0.0 1.0 CB H:GLN137 4.5 0.0 1.0 O3A H:ADP402 4.7 0.0 1.0 CE1 H:HIS161 4.7 0.0 1.0 O2B H:ADP402 4.8 0.0 1.0 O H:VAL159 4.8 0.0 1.0 N H:SER14 4.8 0.0 1.0 C H:ASP154 4.9 0.0 1.0 O H:ASP154 4.9 0.0 1.0 CA H:ASP154 5.0 0.0 1.0

P.S.Gurel, L.Y.Kim, P.V.Ruijgrok, T.Omabegho, Z.Bryant, G.M.Alushin. Cryo-Em Structures Reveal Specialization at the Myosin VI-Actin Interface and A Mechanism of Force Sensitivity. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 29199952
DOI: 10.7554/ELIFE.31125