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Magnesium in PDB 6efx: Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp

Enzymatic activity of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp

All present enzymatic activity of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp:
4.2.1.93;

Protein crystallography data

The structure of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp, PDB code: 6efx was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.98 / 2.00
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.340, 85.340, 187.930, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 21.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp (pdb code 6efx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp, PDB code: 6efx:

Magnesium binding site 1 out of 1 in 6efx

Go back to Magnesium Binding Sites List in 6efx
Magnesium binding site 1 out of 1 in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:24.9
occ:1.00
 O1B A:ANP401 2.0 23.5 1.0
O A:HOH672 2.1 27.6 1.0
O A:HOH557 2.1 22.7 1.0
O1G A:ANP401 2.1 24.1 1.0
O A:HOH579 2.2 21.2 1.0
O A:HOH556 2.2 24.3 1.0
PG A:ANP401 3.2 24.4 1.0
PB A:ANP401 3.2 26.5 1.0
N3B A:ANP401 3.5 21.9 1.0
O3G A:ANP401 3.6 26.9 1.0
O2B A:ANP401 3.7 23.1 1.0
NZ A:LYS208 3.7 19.8 1.0
O A:HOH530 3.9 35.1 1.0
OE2 A:GLU173 4.1 30.4 1.0
O A:HOH702 4.1 40.7 1.0
OD1 A:ASP142 4.3 21.4 1.0
OD2 A:ASP142 4.3 25.7 1.0
OE1 A:GLU173 4.4 25.9 1.0
ND2 A:ASN170 4.4 27.7 1.0
O3A A:ANP401 4.5 27.9 1.0
O A:HOH527 4.5 27.8 1.0
O2G A:ANP401 4.5 24.2 1.0
CD A:GLU173 4.7 30.5 1.0
CG A:ASP142 4.7 23.0 1.0
CE A:LYS208 4.9 24.4 1.0
CB A:ASN170 4.9 25.1 1.0
CA A:ALA143 5.0 23.7 1.0
CG A:ASN170 5.0 29.7 1.0

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp To Be Published.
Page generated: Wed Aug 13 05:42:49 2025

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