Atomistry » Magnesium » PDB 6e8s-6el0 » 6efx
Atomistry »
  Magnesium »
    PDB 6e8s-6el0 »
      6efx »

Magnesium in PDB 6efx: Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp

Enzymatic activity of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp

All present enzymatic activity of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp:
4.2.1.93;

Protein crystallography data

The structure of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp, PDB code: 6efx was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.98 / 2.00
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.340, 85.340, 187.930, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 21.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp (pdb code 6efx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp, PDB code: 6efx:

Magnesium binding site 1 out of 1 in 6efx

Go back to Magnesium Binding Sites List in 6efx
Magnesium binding site 1 out of 1 in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:24.9
occ:1.00
 O1B A:ANP401 2.0 23.5 1.0
O A:HOH672 2.1 27.6 1.0
O A:HOH557 2.1 22.7 1.0
O1G A:ANP401 2.1 24.1 1.0
O A:HOH579 2.2 21.2 1.0
O A:HOH556 2.2 24.3 1.0
PG A:ANP401 3.2 24.4 1.0
PB A:ANP401 3.2 26.5 1.0
N3B A:ANP401 3.5 21.9 1.0
O3G A:ANP401 3.6 26.9 1.0
O2B A:ANP401 3.7 23.1 1.0
NZ A:LYS208 3.7 19.8 1.0
O A:HOH530 3.9 35.1 1.0
OE2 A:GLU173 4.1 30.4 1.0
O A:HOH702 4.1 40.7 1.0
OD1 A:ASP142 4.3 21.4 1.0
OD2 A:ASP142 4.3 25.7 1.0
OE1 A:GLU173 4.4 25.9 1.0
ND2 A:ASN170 4.4 27.7 1.0
O3A A:ANP401 4.5 27.9 1.0
O A:HOH527 4.5 27.8 1.0
O2G A:ANP401 4.5 24.2 1.0
CD A:GLU173 4.7 30.5 1.0
CG A:ASP142 4.7 23.0 1.0
CE A:LYS208 4.9 24.4 1.0
CB A:ASN170 4.9 25.1 1.0
CA A:ALA143 5.0 23.7 1.0
CG A:ASN170 5.0 29.7 1.0

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Amppnp To Be Published.
Page generated: Mon Sep 30 23:56:38 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy