Magnesium in PDB 6ii6: Crystal Structure of the Makes Caterpillars Floppy (Mcf)-Like Effector of Vibrio Vulnificus MO6-24/O in Complex with A Human Adp- Ribosylation Factor 3 (ARF3)

The structure of Crystal Structure of the Makes Caterpillars Floppy (Mcf)-Like Effector of Vibrio Vulnificus MO6-24/O in Complex with A Human Adp- Ribosylation Factor 3 (ARF3), PDB code: 6ii6 was solved by Y.Lee, B.S.Kim, S.Choi, E.Y.Lee, S.Park, J.Hwang, Y.Kwon, J.Hyun, C.Lee, S.H.Eom, M.H.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.293, 117.523, 186.348, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 23.2

The binding sites of Magnesium atom in the Crystal Structure of the Makes Caterpillars Floppy (Mcf)-Like Effector of Vibrio Vulnificus MO6-24/O in Complex with A Human Adp- Ribosylation Factor 3 (ARF3) (pdb code 6ii6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Makes Caterpillars Floppy (Mcf)-Like Effector of Vibrio Vulnificus MO6-24/O in Complex with A Human Adp- Ribosylation Factor 3 (ARF3), PDB code: 6ii6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Makes Caterpillars Floppy (Mcf)-Like Effector of Vibrio Vulnificus MO6-24/O in Complex with A Human Adp- Ribosylation Factor 3 (ARF3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Makes Caterpillars Floppy (Mcf)-Like Effector of Vibrio Vulnificus MO6-24/O in Complex with A Human Adp- Ribosylation Factor 3 (ARF3) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:16.6 occ:1.00 O3G C:GTP1001 2.0 16.0 1.0 O2B C:GTP1001 2.0 16.1 1.0 OG1 C:THR31 2.0 14.7 1.0 O C:HOH1119 2.0 16.5 1.0 O C:HOH1120 2.1 13.8 1.0 OG1 C:THR48 2.2 16.1 1.0 CB C:THR31 3.1 15.5 1.0 CB C:THR48 3.1 17.5 1.0 PG C:GTP1001 3.2 19.9 1.0 PB C:GTP1001 3.2 17.5 1.0 O3B C:GTP1001 3.4 17.3 1.0 O2G C:GTP1001 3.7 20.3 1.0 N C:THR48 3.8 17.8 1.0 N C:THR31 3.9 15.8 1.0 OD2 C:ASP67 4.0 21.1 1.0 OD1 C:ASP67 4.0 22.5 1.0 CA C:THR31 4.1 15.9 1.0 O1A C:GTP1001 4.1 17.6 1.0 CA C:THR48 4.1 17.8 1.0 CG2 C:THR31 4.2 15.8 1.0 CG2 C:THR48 4.3 16.7 1.0 O C:ILE46 4.3 24.3 1.0 O3A C:GTP1001 4.3 17.6 1.0 O C:HOH1112 4.3 17.2 1.0 O1B C:GTP1001 4.3 16.8 1.0 O1G C:GTP1001 4.5 18.9 1.0 CG C:ASP67 4.5 23.3 1.0 PA C:GTP1001 4.5 19.3 1.0 O2A C:GTP1001 4.7 20.5 1.0 ND2 C:ASN52 4.8 16.4 1.0 C C:PRO47 4.9 21.4 1.0 CB C:LYS30 5.0 18.1 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Makes Caterpillars Floppy (Mcf)-Like Effector of Vibrio Vulnificus MO6-24/O in Complex with A Human Adp- Ribosylation Factor 3 (ARF3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Makes Caterpillars Floppy (Mcf)-Like Effector of Vibrio Vulnificus MO6-24/O in Complex with A Human Adp- Ribosylation Factor 3 (ARF3) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1002 b:27.5 occ:1.00 O D:HOH1115 2.0 23.8 1.0 O1B D:GTP1001 2.0 26.1 1.0 O1G D:GTP1001 2.0 29.8 1.0 O D:HOH1120 2.1 21.8 1.0 OG1 D:THR31 2.2 22.1 1.0 OG1 D:THR48 2.3 21.2 1.0 PG D:GTP1001 3.1 29.6 1.0 CB D:THR48 3.1 21.2 1.0 PB D:GTP1001 3.2 27.1 1.0 CB D:THR31 3.2 23.6 1.0 O3B D:GTP1001 3.4 31.4 1.0 O3G D:GTP1001 3.5 27.1 1.0 N D:THR48 3.9 25.4 1.0 N D:THR31 3.9 24.7 1.0 OD2 D:ASP67 4.1 22.6 1.0 OD1 D:ASP67 4.1 29.0 1.0 CA D:THR48 4.1 22.1 1.0 O2A D:GTP1001 4.2 31.1 1.0 CA D:THR31 4.2 24.3 1.0 O D:HOH1103 4.2 28.2 1.0 O D:ILE46 4.2 38.3 1.0 O2B D:GTP1001 4.2 24.8 1.0 CG2 D:THR48 4.2 19.4 1.0 CG2 D:THR31 4.3 23.4 1.0 O3A D:GTP1001 4.3 27.9 1.0 O2G D:GTP1001 4.4 31.9 1.0 PA D:GTP1001 4.5 27.1 1.0 CG D:ASP67 4.5 24.0 1.0 O1A D:GTP1001 4.7 32.2 1.0 C D:PRO47 4.9 29.7 1.0 CB D:LYS30 4.9 26.4 1.0 OD1 D:ASN52 4.9 25.3 1.0 O D:HOH1112 5.0 33.3 1.0

Y.Lee, B.S.Kim, S.Choi, E.Y.Lee, S.Park, J.Hwang, Y.Kwon, J.Hyun, C.Lee, S.H.Eom, M.H.Kim. Crystal Structure of Pathogenic Bacterial Toxin A with A Host Protein To Be Published.