Atomistry » Magnesium » PDB 6rvz-6s4c » 6s06
Atomistry »
  Magnesium »
    PDB 6rvz-6s4c »
      6s06 »

Magnesium in PDB 6s06: Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26

Enzymatic activity of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26

All present enzymatic activity of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26:
3.8.1.5;

Protein crystallography data

The structure of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26, PDB code: 6s06 was solved by I.Iermak, J.R.Mesters, O.Degtjarik, R.Chaloupkova, I.Kuta Smatanova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.724, 68.709, 80.614, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 6s06:

The structure of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 (pdb code 6s06). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26, PDB code: 6s06:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 6s06

Go back to Magnesium Binding Sites List in 6s06
Magnesium binding site 1 out of 3 in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:13.2
occ:1.00
 O A:HOH541 2.1 13.5 1.0
OE1 A:GLU161 4.2 21.7 1.0
OE2 A:GLU161 4.3 21.4 1.0
O A:HOH723 4.3 45.8 1.0
CD A:GLU161 4.7 15.7 1.0

Magnesium binding site 2 out of 3 in 6s06

Go back to Magnesium Binding Sites List in 6s06
Magnesium binding site 2 out of 3 in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:22.1
occ:1.00
 O A:HOH536 2.0 18.1 1.0
O A:HOH512 2.2 18.6 1.0
O A:HOH510 2.3 27.6 1.0
O A:HOH571 4.2 13.4 1.0
OD2 A:ASP70 4.2 13.1 1.0
O A:HOH630 4.2 17.4 1.0
OE2 A:GLU15 4.3 26.1 1.0
OE1 A:GLU15 4.3 25.9 1.0
O A:GLY18 4.4 13.3 1.0
CD A:GLU15 4.7 19.2 1.0
N A:ARG20 4.9 12.3 1.0
CB A:ARG20 4.9 13.7 1.0

Magnesium binding site 3 out of 3 in 6s06

Go back to Magnesium Binding Sites List in 6s06
Magnesium binding site 3 out of 3 in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg404

b:25.8
occ:1.00
 O A:HOH520 2.0 26.2 1.0
O A:HOH688 2.1 50.5 1.0
O A:HOH700 2.2 34.8 1.0
OE1 A:GLU26 4.2 20.2 1.0
OE1 A:GLU10 4.3 20.3 0.5
O A:HOH558 4.3 48.1 1.0
CG A:GLU10 4.9 22.2 1.0

Reference:

P.Havlickova, I.Iermak, O.Degtjarik, T.Prudnikova, J.R.Mesters, R.Chaloupkova, J.Damborsky, M.Kuty, I.Kuta Smatanova. Computational and Experimental Design of Transport Tunnel in Hld LINB73 From Sphingobium Japonicum UT26 To Be Published.
Page generated: Tue Oct 1 17:35:57 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy