Magnesium in PDB 6kf9: Cryo-Em Structure of Thermococcus Kodakarensis Rna Polymerase

All present enzymatic activity of Cryo-Em Structure of Thermococcus Kodakarensis Rna Polymerase:
2.7.7.6;

The structure of Cryo-Em Structure of Thermococcus Kodakarensis Rna Polymerase also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Thermococcus Kodakarensis Rna Polymerase (pdb code 6kf9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Thermococcus Kodakarensis Rna Polymerase, PDB code: 6kf9:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Thermococcus Kodakarensis Rna Polymerase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Thermococcus Kodakarensis Rna Polymerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:23.9 occ:1.00 OD1 A:ASP465 2.1 24.7 1.0 OD2 A:ASP465 2.1 24.7 1.0 CG A:ASP465 2.4 24.7 1.0 OD1 A:ASP461 2.5 23.3 1.0 OD1 A:ASP463 3.0 22.4 1.0 CG A:ASP461 3.6 23.3 1.0 CB A:ASP465 3.9 24.7 1.0 OD2 A:ASP461 4.0 23.3 1.0 CG A:ASP463 4.0 22.4 1.0 NH2 A:ARG426 4.1 28.0 1.0 OD2 A:ASP463 4.3 22.4 1.0 O A:ASP461 4.4 23.3 1.0 N A:ASP461 4.5 23.3 1.0 CA A:ASP465 4.7 24.7 1.0 C A:ASP461 4.8 23.3 1.0 CB A:ASP461 4.8 23.3 1.0 O A:ASP463 4.9 22.4 1.0 CA A:ASP461 4.9 23.3 1.0

S.-H.Jun, J.Hyun, H.Jeong, J.S.Cha, H.Kim, M.S.Bartlett, H.-S.Cho, K.S.Murakami. Cryo-Em Structure of Thermococcus Kodakarensis Rna Polymerase To Be Published.