Magnesium in PDB 6lzb: Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06

Enzymatic activity of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06

All present enzymatic activity of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06:
3.4.11.18;

Protein crystallography data

The structure of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06, PDB code: 6lzb was solved by C.B.Sandeep, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	40.53 / 1.29
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	47.573, 77.251, 48.623, 90, 91.54, 90
*R / R_free (%)*	16.3 / 20

Other elements in 6lzb:

The structure of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06 also contains other interesting chemical elements:

Cobalt	(Co)	2 atoms
Sodium	(Na)	1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06 (pdb code 6lzb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06, PDB code: 6lzb:

Magnesium binding site 1 out of 1 in 6lzb

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Magnesium Binding Sites List in 6lzb

Magnesium binding site 1 out of 1 in the Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg408 b:20.4 occ:1.00	O	A:HOH619	1.6	52.3	1.0
	O	A:HOH591	1.9	44.0	1.0
	O	A:HOH648	1.9	43.8	1.0
	NE2	A:HIS99	2.0	29.2	1.0
	O	A:HOH660	2.2	28.7	0.5
	O	A:HOH685	2.2	31.1	0.5
	O	A:HOH685	2.7	37.1	0.5
	CE1	A:HIS99	2.9	27.7	1.0
	CD2	A:HIS99	3.0	26.6	1.0
	ND1	A:HIS99	4.1	25.5	1.0
	CG	A:HIS99	4.1	23.9	1.0
	O	A:HOH661	4.4	27.7	1.0
	O	A:HOH551	4.6	32.3	1.0
	CG	A:ARG218	5.0	22.2	1.0

Reference:

C.B.Sandeep, A.Addlagatta. Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06 To Be Published.

Page generated: Wed Aug 13 11:56:48 2025

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