Magnesium in PDB 6lzc: Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with Kv-P2-4H-05

Enzymatic activity of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with Kv-P2-4H-05

All present enzymatic activity of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with Kv-P2-4H-05:
3.4.11.18;

Protein crystallography data

The structure of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with Kv-P2-4H-05, PDB code: 6lzc was solved by C.B.Sandeep, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.53 / 1.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.552, 77.219, 48.651, 90, 91.55, 90
R / Rfree (%) 16.7 / 19.7

Other elements in 6lzc:

The structure of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with Kv-P2-4H-05 also contains other interesting chemical elements:

Sodium (Na) 1 atom
Cobalt (Co) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with Kv-P2-4H-05 (pdb code 6lzc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with Kv-P2-4H-05, PDB code: 6lzc:

Magnesium binding site 1 out of 1 in 6lzc

Go back to Magnesium Binding Sites List in 6lzc
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with Kv-P2-4H-05


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with Kv-P2-4H-05 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg408

b:19.8
occ:1.00
 O A:HOH530 1.6 39.5 1.0
O A:HOH619 1.7 43.4 1.0
NE2 A:HIS99 2.0 28.5 1.0
O A:HOH657 2.1 42.8 1.0
O A:HOH661 2.2 45.2 1.0
O A:HOH676 2.5 55.3 1.0
O A:HOH677 2.8 58.2 1.0
CE1 A:HIS99 3.0 26.7 1.0
CD2 A:HIS99 3.0 28.0 1.0
ND1 A:HIS99 4.1 26.1 1.0
CG A:HIS99 4.1 26.0 1.0
O A:HOH659 4.4 30.2 1.0
O A:HOH559 4.6 33.7 1.0
CG A:ARG218 4.9 23.9 1.0

Reference:

C.B.Sandeep, A.Addlagatta. Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06 To Be Published.
Page generated: Wed Mar 3 14:50:33 2021

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