Magnesium in PDB 6m3y: Crystal Structure of Pilus Adhesin, Spac From Lactobacillus Rhamnosus Gg - Open Conformation

The structure of Crystal Structure of Pilus Adhesin, Spac From Lactobacillus Rhamnosus Gg - Open Conformation, PDB code: 6m3y was solved by A.Kant, A.Palva, I.Von Ossowski, V.Krishnan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	83.53 / 1.93
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	81.045, 110.023, 128.344, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 24.8

The binding sites of Magnesium atom in the Crystal Structure of Pilus Adhesin, Spac From Lactobacillus Rhamnosus Gg - Open Conformation (pdb code 6m3y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pilus Adhesin, Spac From Lactobacillus Rhamnosus Gg - Open Conformation, PDB code: 6m3y:

Magnesium binding site 1 out of 1 in the Crystal Structure of Pilus Adhesin, Spac From Lactobacillus Rhamnosus Gg - Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pilus Adhesin, Spac From Lactobacillus Rhamnosus Gg - Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:28.8 occ:1.00 O A:HOH1019 2.1 26.9 1.0 OG1 A:THR229 2.1 28.6 1.0 O A:HOH1074 2.1 27.2 1.0 OG A:SER147 2.1 33.2 1.0 OG A:SER145 2.1 28.7 1.0 CB A:SER145 2.9 26.9 1.0 CB A:SER147 3.1 33.8 1.0 CB A:THR229 3.4 26.7 1.0 CG2 A:THR229 3.8 26.8 1.0 N A:SER147 3.9 32.0 1.0 CA A:SER147 4.0 34.7 1.0 OD2 A:ASP258 4.1 43.2 1.0 OD1 A:ASP258 4.1 37.5 1.0 CA A:SER145 4.3 25.9 1.0 O A:VAL260 4.3 29.1 1.0 OD1 A:ASP143 4.3 26.7 1.0 OD2 A:ASP143 4.3 26.3 1.0 C A:SER145 4.5 26.8 1.0 CA A:THR229 4.5 25.9 1.0 CG A:ASP258 4.5 40.0 1.0 N A:GLY146 4.6 28.6 1.0 N A:THR229 4.7 25.8 1.0 C A:SER147 4.7 34.6 1.0 CG A:ASP143 4.8 26.1 1.0 N A:MET148 4.8 35.5 1.0 C A:GLY228 4.9 25.9 1.0 O A:GLY227 4.9 24.1 1.0

A.Kant, A.Palva, I.Von Ossowski, V.Krishnan. Crystal Structure of Lactobacillar Spac Reveals An Atypical Five-Domain Pilus Tip Adhesin: Exposing Its Substrate-Binding and Assembly in Spacba Pili. J.Struct.Biol. V. 211 07571 2020.
ISSN: ESSN 1095-8657
PubMed: 32653644
DOI: 10.1016/J.JSB.2020.107571