Magnesium in PDB 6vr8: Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus

The structure of Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus, PDB code: 6vr8 was solved by V.Carbone, L.R.Schofield, A.J.Sutherland-Smith, R.S.Ronimus, B.P.Subedi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.07 / 1.90
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	119.369, 119.369, 71.088, 90, 90, 120
R / Rfree (%)	18.5 / 23.3

The binding sites of Magnesium atom in the Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus (pdb code 6vr8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus, PDB code: 6vr8:

Magnesium binding site 1 out of 1 in the Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg502 b:33.9 occ:1.00 O I:HOH859 2.1 34.6 1.0 O1 I:PO4501 2.6 25.5 1.0 O I:HOH915 3.0 24.4 1.0 O2 I:PO4501 3.3 27.1 1.0 O I:HOH649 3.5 22.5 1.0 P I:PO4501 3.5 23.6 1.0 CG I:ARG325 3.7 23.6 1.0 ND2 I:ASN294 3.7 18.2 1.0 OG1 I:THR117 3.8 16.2 1.0 O4 I:PO4501 4.2 22.7 1.0 CE2 I:PHE339 4.2 30.0 1.0 O I:HOH639 4.3 23.2 1.0 CB I:TYR290 4.4 21.6 1.0 CD2 I:TYR290 4.4 29.3 1.0 CB I:THR117 4.5 14.2 1.0 NE I:ARG325 4.5 23.6 1.0 CA I:GLY114 4.6 18.4 1.0 CD I:ARG325 4.7 24.1 1.0 CB I:ARG325 4.7 16.4 1.0 CZ I:PHE339 4.7 23.9 1.0 O I:HOH907 4.8 31.2 1.0 CG I:TYR290 4.8 26.4 1.0 O3 I:PO4501 4.8 25.1 1.0 N I:GLY114 4.8 11.7 1.0 O I:HOH925 4.9 24.0 1.0

V.Carbone, L.R.Schofield, A.J.Sutherland-Smith, R.S.Ronimus, B.P.Subedi. Structural Characterisation of A Pseudomurein Peptide Ligase Type E (Pmure) From Methanogenic Archaea To Be Published.