Atomistry » Magnesium » PDB 7dic-7du3 » 7dn3
Atomistry »
  Magnesium »
    PDB 7dic-7du3 »
      7dn3 »

Magnesium in PDB 7dn3: Structure of Human Rna Polymerase III Elongation Complex

Enzymatic activity of Structure of Human Rna Polymerase III Elongation Complex

All present enzymatic activity of Structure of Human Rna Polymerase III Elongation Complex:
2.7.7.6;

Other elements in 7dn3:

The structure of Structure of Human Rna Polymerase III Elongation Complex also contains other interesting chemical elements:

Zinc (Zn) 6 atoms
Iron (Fe) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Human Rna Polymerase III Elongation Complex (pdb code 7dn3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Human Rna Polymerase III Elongation Complex, PDB code: 7dn3:

Magnesium binding site 1 out of 1 in 7dn3

Go back to Magnesium Binding Sites List in 7dn3
Magnesium binding site 1 out of 1 in the Structure of Human Rna Polymerase III Elongation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Human Rna Polymerase III Elongation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1901

b:66.1
occ:1.00
O3' R:U9 2.0 73.6 1.0
OD1 A:ASP499 2.2 65.4 1.0
OD2 A:ASP503 2.2 68.1 1.0
OD1 A:ASP501 2.2 64.2 1.0
OD2 A:ASP501 2.8 64.2 1.0
CG A:ASP499 2.8 65.4 1.0
CG A:ASP501 2.9 64.2 1.0
OD2 A:ASP499 2.9 65.4 1.0
C3' R:U9 3.4 74.4 1.0
CG A:ASP503 3.4 68.1 1.0
O2' R:U9 4.1 75.0 1.0
OD1 A:ASP503 4.1 68.1 1.0
C2' R:U9 4.2 74.6 1.0
C4' R:U9 4.2 75.0 1.0
CB A:ASP499 4.3 65.4 1.0
CB A:ASP503 4.3 68.1 1.0
CB A:ASP501 4.4 64.2 1.0
O A:ASP499 4.4 65.4 1.0
N A:ASP499 4.6 65.4 1.0
C5' R:U9 4.7 75.7 1.0
N A:ASP501 4.7 64.2 1.0
C A:ASP499 4.8 65.4 1.0
CA A:ASP499 4.8 65.4 1.0
NH2 A:ARG464 4.9 68.8 1.0
O5' R:U9 5.0 76.3 1.0
CA A:ASP503 5.0 68.1 1.0
CA A:ASP501 5.0 64.2 1.0
N A:ASP503 5.0 68.1 1.0

Reference:

L.Li, Z.Yu, D.Zhao, Y.Ren, H.Hou, Y.Xu. Structure of Human Rna Polymerase III Elongation Complex. Cell Res. 2021.
ISSN: ISSN 1001-0602
PubMed: 33674783
DOI: 10.1038/S41422-021-00472-2
Page generated: Wed Oct 2 15:55:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy