Magnesium in PDB 7jg5: Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1

Enzymatic activity of Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1

All present enzymatic activity of Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1 (pdb code 7jg5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1, PDB code: 7jg5:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7jg5

Go back to Magnesium Binding Sites List in 7jg5
Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:66.8
occ:1.00
O2B A:ATP600 1.9 64.3 1.0
O1G A:ATP600 2.1 64.3 1.0
OG1 A:THR179 2.1 60.9 1.0
O2G A:ATP600 2.2 64.3 1.0
PG A:ATP600 2.5 64.3 1.0
PB A:ATP600 3.1 64.3 1.0
O3B A:ATP600 3.3 64.3 1.0
CB A:THR179 3.4 60.9 1.0
OD2 A:ASP272 3.6 59.2 1.0
OD1 A:ASP272 3.8 59.2 1.0
NE2 A:GLN211 3.9 60.1 1.0
O3G A:ATP600 3.9 64.3 1.0
CG2 A:THR179 4.1 60.9 1.0
O3A A:ATP600 4.1 64.3 1.0
CG A:ASP272 4.1 59.2 1.0
O1B A:ATP600 4.2 64.3 1.0
N A:THR179 4.4 60.9 1.0
CA A:THR179 4.5 60.9 1.0
OE1 A:GLN211 4.5 60.1 1.0
CD A:GLN211 4.6 60.1 1.0
NZ A:LYS178 4.9 62.0 1.0
CE A:LYS178 4.9 62.0 1.0

Magnesium binding site 2 out of 4 in 7jg5

Go back to Magnesium Binding Sites List in 7jg5
Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:63.0
occ:1.00
O1B B:ATP600 1.8 66.0 1.0
OG1 B:THR179 2.1 62.9 1.0
O1G B:ATP600 2.1 66.0 1.0
O3G B:ATP600 2.2 66.0 1.0
PG B:ATP600 2.5 66.0 1.0
PB B:ATP600 2.8 66.0 1.0
O3B B:ATP600 3.1 66.0 1.0
CB B:THR179 3.3 62.9 1.0
O2B B:ATP600 3.5 66.0 1.0
O2G B:ATP600 4.0 66.0 1.0
O1A B:ATP600 4.1 66.0 1.0
OD2 B:ASP272 4.1 60.4 1.0
CG2 B:THR179 4.2 62.9 1.0
O3A B:ATP600 4.2 66.0 1.0
NE2 B:GLN211 4.2 60.4 1.0
OD1 B:ASP272 4.3 60.4 1.0
N B:THR179 4.3 62.9 1.0
CA B:THR179 4.4 62.9 1.0
CG B:ASP272 4.6 60.4 1.0
PA B:ATP600 4.7 66.0 1.0
NZ B:LYS178 4.8 63.5 1.0
CE B:LYS178 4.9 63.5 1.0

Magnesium binding site 3 out of 4 in 7jg5

Go back to Magnesium Binding Sites List in 7jg5
Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:69.3
occ:1.00
O2B C:ATP600 1.8 71.3 1.0
OG1 C:THR179 2.2 64.5 1.0
O1G C:ATP600 2.3 71.3 1.0
O3G C:ATP600 2.4 71.3 1.0
PG C:ATP600 2.7 71.3 1.0
PB C:ATP600 3.1 71.3 1.0
CB C:THR179 3.2 64.5 1.0
O3B C:ATP600 3.4 71.3 1.0
OE1 C:GLN211 3.4 62.5 1.0
OD2 C:ASP272 3.8 61.5 1.0
OD1 C:ASP272 3.9 61.5 1.0
O1A C:ATP600 4.0 71.3 1.0
CG2 C:THR179 4.0 64.5 1.0
O1B C:ATP600 4.1 71.3 1.0
O2G C:ATP600 4.2 71.3 1.0
O3A C:ATP600 4.2 71.3 1.0
CG C:ASP272 4.2 61.5 1.0
N C:THR179 4.3 64.5 1.0
CA C:THR179 4.3 64.5 1.0
PA C:ATP600 4.5 71.3 1.0
CD C:GLN211 4.5 62.5 1.0
O2A C:ATP600 4.8 71.3 1.0
CG2 C:THR215 4.8 62.1 1.0

Magnesium binding site 4 out of 4 in 7jg5

Go back to Magnesium Binding Sites List in 7jg5
Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Bedaquiline-Free Mycobacterium Smegmatis Atp Synthase Rotational State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:72.2
occ:1.00
OG1 F:THR167 2.1 71.1 1.0
O3B F:ADP600 2.1 73.9 1.0
O2A F:ADP600 2.8 73.9 1.0
N F:THR167 3.2 71.1 1.0
CB F:THR167 3.2 71.1 1.0
CB F:LYS166 3.3 69.0 1.0
PB F:ADP600 3.4 73.9 1.0
CA F:THR167 3.6 71.1 1.0
PA F:ADP600 3.6 73.9 1.0
O2B F:ADP600 3.8 73.9 1.0
O1A F:ADP600 3.8 73.9 1.0
C F:LYS166 3.9 69.0 1.0
O3A F:ADP600 4.0 73.9 1.0
NH2 F:ARG193 4.0 64.0 1.0
CA F:LYS166 4.1 69.0 1.0
CG F:LYS166 4.2 69.0 1.0
OD2 F:ASP254 4.2 65.0 1.0
CG2 F:THR167 4.5 71.1 1.0
N F:LYS166 4.6 69.0 1.0
O1B F:ADP600 4.6 73.9 1.0
O F:LYS166 4.8 69.0 1.0
OD1 F:ASP254 5.0 65.0 1.0

Reference:

H.Guo, G.M.Courbon, S.A.Bueler, J.Mai, J.Liu, J.L.Rubinstein. Structure of Mycobacterial Atp Synthase with the Tb Drug Bedaquiline Biorxiv 2020.
DOI: 10.1101/2020.08.06.225375
Page generated: Tue Dec 15 03:37:16 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy