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Magnesium in PDB 7xbz: Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197

Enzymatic activity of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197

All present enzymatic activity of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197:
3.4.21.92;

Protein crystallography data

The structure of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197, PDB code: 7xbz was solved by B.Y.Wei, J.H.Gan, C.-G.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 93.903, 125.646, 145.23, 90, 93.72, 90
R / Rfree (%) 19.6 / 22.1

Other elements in 7xbz:

The structure of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 also contains other interesting chemical elements:

Fluorine (F) 36 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 (pdb code 7xbz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197, PDB code: 7xbz:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 7xbz

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Magnesium binding site 1 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:41.8
occ:1.00
 O A:HOH341 2.6 43.4 1.0
O A:PRO86 2.6 24.8 1.0
O A:HOH339 2.7 21.5 1.0
O A:ILE81 2.7 23.6 1.0
O A:ILE84 3.3 28.5 1.0
C A:PRO86 3.7 24.1 1.0
C A:ILE81 3.8 23.3 1.0
CG1 A:ILE84 4.0 23.7 1.0
N A:VAL88 4.1 25.7 1.0
CG2 A:VAL88 4.1 26.9 1.0
CA A:ASP87 4.1 24.2 1.0
CG2 A:ILE81 4.2 21.9 1.0
C A:ILE84 4.3 28.0 1.0
N A:ASP87 4.3 23.1 1.0
C A:ASP87 4.4 25.2 1.0
O A:LYS85 4.5 28.4 1.0
O A:HOH322 4.5 18.7 1.0
CA A:GLN82 4.6 25.1 1.0
N A:GLN82 4.6 23.9 1.0
C A:LYS85 4.7 28.0 1.0
CA A:ILE81 4.7 21.5 1.0
O A:GLN82 4.7 25.3 1.0
C A:GLN82 4.7 25.9 1.0
CB A:VAL88 4.7 26.4 1.0
CD1 A:ILE84 4.8 24.6 1.0
N A:PRO86 4.9 25.6 1.0
CA A:PRO86 4.9 24.8 1.0
N A:ILE84 4.9 27.6 1.0
CA A:ILE84 5.0 26.6 1.0

Magnesium binding site 2 out of 12 in 7xbz

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Magnesium binding site 2 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg203

b:51.0
occ:1.00
 OD1 A:ASN173 2.5 43.8 1.0
O A:PHE174 2.6 29.2 1.0
C A:PHE174 3.6 27.2 1.0
CG A:ASN173 3.7 38.3 1.0
N A:PHE174 3.7 26.3 1.0
CD2 A:LEU175 3.9 41.0 1.0
CA A:PHE174 4.3 25.3 1.0
C A:ASN173 4.3 27.5 1.0
O A:HOH334 4.3 29.8 1.0
CA A:ASN173 4.5 29.4 1.0
ND2 A:ASN173 4.5 37.0 1.0
O A:HOH351 4.6 39.3 1.0
N A:LEU175 4.7 27.7 1.0
CB A:ASN173 4.7 33.8 1.0
O G:HOH348 4.9 28.5 1.0
OE1 A:GLU179 4.9 34.4 1.0
CB A:PHE174 4.9 26.8 1.0
CA A:LEU175 4.9 28.5 1.0
CG A:LEU175 5.0 36.6 1.0

Magnesium binding site 3 out of 12 in 7xbz

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Magnesium binding site 3 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg201

b:36.0
occ:1.00
 O B:ILE81 2.6 25.5 1.0
O B:HOH314 2.7 39.1 1.0
O B:HOH348 2.7 17.9 1.0
O B:PRO86 2.7 27.9 1.0
O B:HOH320 3.2 37.8 1.0
O B:ILE84 3.2 26.6 1.0
C B:ILE81 3.7 25.9 1.0
C B:PRO86 3.8 25.7 1.0
CG1 B:ILE84 3.9 27.3 1.0
C B:ILE84 4.2 28.6 1.0
CG2 B:ILE81 4.2 24.4 1.0
CG2 B:VAL88 4.2 25.0 1.0
N B:VAL88 4.2 23.2 1.0
CA B:ASP87 4.3 23.2 1.0
N B:ASP87 4.4 24.3 1.0
O B:LYS85 4.4 27.4 1.0
CA B:GLN82 4.4 28.4 1.0
O B:HOH310 4.5 22.1 1.0
O B:GLN82 4.5 27.6 1.0
N B:GLN82 4.6 27.0 1.0
C B:ASP87 4.6 22.3 1.0
C B:GLN82 4.6 27.7 1.0
C B:LYS85 4.6 26.2 1.0
CA B:ILE81 4.7 24.3 1.0
N B:ILE84 4.8 27.8 1.0
CD1 B:ILE84 4.8 27.6 1.0
CB B:VAL88 4.9 25.1 1.0
N B:PRO86 4.9 25.2 1.0
CA B:ILE84 4.9 28.3 1.0
CA B:PRO86 4.9 25.1 1.0
OE1 B:GLN82 5.0 27.6 1.0

Magnesium binding site 4 out of 12 in 7xbz

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Magnesium binding site 4 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg202

b:41.2
occ:1.00
 O C:HOH326 2.5 24.7 1.0
O C:PRO86 2.8 33.6 1.0
O C:ILE81 2.8 36.9 1.0
O C:ILE84 3.4 37.9 1.0
C C:PRO86 3.8 33.1 1.0
C C:ILE81 3.9 35.5 1.0
CA C:ASP87 4.1 32.1 1.0
N C:VAL88 4.2 31.5 1.0
CG1 C:ILE84 4.2 33.8 1.0
CG2 C:ILE81 4.2 35.7 1.0
O C:HOH312 4.3 35.0 1.0
N C:ASP87 4.3 30.9 1.0
CG2 C:VAL88 4.3 28.8 1.0
C C:ILE84 4.4 40.2 1.0
O C:LYS85 4.4 33.1 1.0
C C:ASP87 4.5 32.0 1.0
CA C:GLN82 4.5 36.9 1.0
O C:GLN82 4.6 35.0 1.0
C C:LYS85 4.7 34.1 1.0
N C:GLN82 4.7 35.1 1.0
C C:GLN82 4.7 37.7 1.0
CA C:ILE81 4.8 33.3 1.0
OE1 C:GLN82 4.9 35.4 1.0
CB C:VAL88 4.9 30.2 1.0
N C:PRO86 5.0 30.7 1.0
CA C:PRO86 5.0 30.9 1.0

Magnesium binding site 5 out of 12 in 7xbz

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Magnesium binding site 5 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg201

b:51.2
occ:1.00
 O F:HOH325 2.5 45.0 1.0
O F:PRO86 2.7 41.3 1.0
O F:HOH322 2.8 33.2 1.0
O F:ILE81 2.8 33.3 1.0
O F:ILE84 3.2 41.6 1.0
C F:PRO86 3.7 38.5 1.0
C F:ILE81 4.0 34.3 1.0
CG1 F:ILE84 4.1 37.3 1.0
CA F:ASP87 4.1 39.0 1.0
C F:ILE84 4.2 38.3 1.0
N F:VAL88 4.2 35.1 1.0
O F:LYS85 4.3 39.8 1.0
N F:ASP87 4.3 38.0 1.0
CG2 F:ILE81 4.4 33.8 1.0
CG2 F:VAL88 4.4 33.6 1.0
O F:HOH316 4.4 33.5 1.0
C F:LYS85 4.5 38.6 1.0
C F:ASP87 4.5 37.0 1.0
CA F:GLN82 4.6 36.6 1.0
O F:GLN82 4.6 37.0 1.0
C F:GLN82 4.7 36.7 1.0
N F:GLN82 4.7 36.0 1.0
N F:PRO86 4.8 36.4 1.0
CA F:PRO86 4.9 38.8 1.0
CA F:ILE81 4.9 32.9 1.0
N F:ILE84 4.9 36.0 1.0
CA F:ILE84 5.0 37.5 1.0

Magnesium binding site 6 out of 12 in 7xbz

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Magnesium binding site 6 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg202

b:39.4
occ:1.00
 O G:HOH313 2.6 41.5 1.0
O G:PRO86 2.7 32.2 1.0
O G:ILE81 2.8 27.1 1.0
O G:HOH332 2.8 24.6 1.0
O G:ILE84 3.2 28.2 1.0
C G:PRO86 3.7 34.1 1.0
C G:ILE81 3.9 27.9 1.0
CG1 G:ILE84 4.1 25.7 1.0
CA G:ASP87 4.1 30.6 1.0
C G:ILE84 4.2 29.4 1.0
N G:VAL88 4.2 26.5 1.0
O G:LYS85 4.3 29.9 1.0
N G:ASP87 4.3 31.4 1.0
CG2 G:ILE81 4.3 26.8 1.0
CG2 G:VAL88 4.4 22.3 1.0
C G:ASP87 4.5 29.5 1.0
C G:LYS85 4.5 29.1 1.0
CA G:GLN82 4.6 27.8 1.0
O G:HOH316 4.6 27.1 1.0
O G:GLN82 4.6 29.6 1.0
N G:GLN82 4.7 27.8 1.0
C G:GLN82 4.7 29.5 1.0
NE2 G:GLN82 4.7 29.5 1.0
N G:PRO86 4.8 30.1 1.0
CA G:ILE81 4.8 26.6 1.0
CA G:PRO86 4.9 30.5 1.0
CD1 G:ILE84 4.9 26.9 1.0
N G:ILE84 4.9 28.4 1.0
CB G:VAL88 5.0 23.7 1.0
CA G:ILE84 5.0 28.1 1.0

Magnesium binding site 7 out of 12 in 7xbz

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Magnesium binding site 7 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg201

b:39.4
occ:1.00
 O H:HOH313 2.4 37.5 1.0
O H:HOH336 2.6 22.6 1.0
O H:PRO86 2.6 24.3 1.0
O H:ILE81 2.8 26.6 1.0
O H:ILE84 3.4 29.1 1.0
C H:PRO86 3.7 25.4 1.0
C H:ILE81 3.9 27.2 1.0
N H:VAL88 4.0 24.8 1.0
CA H:ASP87 4.1 24.6 1.0
CG1 H:ILE84 4.1 24.6 1.0
CG2 H:VAL88 4.2 26.7 1.0
CG2 H:ILE81 4.2 28.7 1.0
N H:ASP87 4.3 25.2 1.0
C H:ILE84 4.3 28.3 1.0
C H:ASP87 4.4 25.1 1.0
O H:LYS85 4.4 26.4 1.0
O H:HOH319 4.5 21.4 1.0
CA H:GLN82 4.6 29.0 1.0
C H:LYS85 4.7 24.8 1.0
N H:GLN82 4.7 25.4 1.0
O H:GLN82 4.7 30.4 1.0
CA H:ILE81 4.7 25.3 1.0
CB H:VAL88 4.8 25.6 1.0
C H:GLN82 4.8 29.3 1.0
N H:PRO86 4.9 26.3 1.0
CA H:PRO86 4.9 24.8 1.0
CD1 H:ILE84 4.9 25.1 1.0
OE1 H:GLN82 5.0 30.6 1.0

Magnesium binding site 8 out of 12 in 7xbz

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Magnesium binding site 8 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg203

b:35.8
occ:1.00
 O I:HOH333 2.5 49.2 1.0
O I:HOH352 2.6 22.8 1.0
O I:PRO86 2.7 28.0 1.0
O I:ILE81 2.7 28.3 1.0
O I:ILE84 3.3 28.4 1.0
C I:PRO86 3.8 26.9 1.0
C I:ILE81 3.8 28.2 1.0
CG1 I:ILE84 4.1 25.6 1.0
CA I:ASP87 4.2 25.9 1.0
N I:VAL88 4.2 23.1 1.0
CG2 I:ILE81 4.2 24.4 1.0
C I:ILE84 4.2 28.6 1.0
CG2 I:VAL88 4.3 22.8 1.0
N I:ASP87 4.4 25.8 1.0
O I:LYS85 4.4 25.0 1.0
O I:HOH310 4.5 20.8 1.0
CA I:GLN82 4.5 27.1 1.0
C I:ASP87 4.5 25.3 1.0
O I:GLN82 4.6 29.9 1.0
N I:GLN82 4.6 30.1 1.0
C I:LYS85 4.6 28.2 1.0
NE2 I:GLN82 4.6 30.4 1.0
C I:GLN82 4.7 28.9 1.0
CA I:ILE81 4.7 26.4 1.0
N I:PRO86 4.9 25.5 1.0
CB I:VAL88 4.9 23.7 1.0
CD1 I:ILE84 4.9 26.4 1.0
CA I:PRO86 4.9 26.8 1.0
N I:ILE84 4.9 27.2 1.0
CA I:ILE84 5.0 26.7 1.0

Magnesium binding site 9 out of 12 in 7xbz

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Magnesium binding site 9 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg201

b:49.1
occ:1.00
 O J:HOH323 2.5 32.7 1.0
O J:HOH325 2.7 46.3 1.0
O J:PRO86 2.7 33.9 1.0
O J:ILE81 2.9 40.3 1.0
O J:ILE84 3.4 37.2 1.0
C J:PRO86 3.7 35.8 1.0
C J:ILE81 3.9 41.6 1.0
CA J:ASP87 4.1 34.6 1.0
N J:VAL88 4.1 33.2 1.0
CG1 J:ILE84 4.2 34.6 1.0
CG2 J:ILE81 4.2 34.7 1.0
CG2 J:VAL88 4.3 35.2 1.0
N J:ASP87 4.3 34.4 1.0
O J:HOH306 4.4 28.3 1.0
C J:ILE84 4.4 39.0 1.0
C J:ASP87 4.4 32.5 1.0
O J:LYS85 4.4 33.6 1.0
CA J:GLN82 4.6 43.5 1.0
C J:LYS85 4.7 35.0 1.0
O J:GLN82 4.7 42.2 1.0
N J:GLN82 4.7 42.5 1.0
CB J:VAL88 4.8 34.7 1.0
C J:GLN82 4.8 41.7 1.0
CA J:ILE81 4.8 37.7 1.0
N J:PRO86 4.9 33.6 1.0
CA J:PRO86 4.9 37.0 1.0
OE1 J:GLN82 4.9 43.3 1.0

Magnesium binding site 10 out of 12 in 7xbz

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Magnesium binding site 10 out of 12 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with R- ZG197 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg202

b:59.7
occ:1.00
 O K:PRO86 2.5 42.0 1.0
O K:HOH315 2.5 37.2 1.0
O K:ILE81 2.6 48.6 1.0
O K:ILE84 3.1 44.6 1.0
C K:PRO86 3.6 40.6 1.0
CG1 K:ILE84 3.7 50.2 1.0
C K:ILE81 3.7 43.2 1.0
CG2 K:VAL88 4.0 43.4 1.0
C K:ILE84 4.0 46.8 1.0
N K:VAL88 4.1 45.5 1.0
CA K:ASP87 4.2 43.9 1.0
CG2 K:ILE81 4.2 37.6 1.0
N K:ASP87 4.3 42.1 1.0
O K:LYS85 4.4 45.5 1.0
C K:ASP87 4.4 46.0 1.0
C K:LYS85 4.5 43.6 1.0
CD1 K:ILE84 4.5 52.9 1.0
CA K:ILE81 4.6 41.0 1.0
CA K:GLN82 4.6 47.4 1.0
N K:PRO86 4.6 40.8 1.0
N K:GLN82 4.7 43.8 1.0
CA K:PRO86 4.7 40.2 1.0
CB K:VAL88 4.7 42.8 1.0
O K:GLN82 4.7 49.9 1.0
N K:ILE84 4.7 52.9 1.0
CA K:ILE84 4.7 48.4 1.0
O K:HOH305 4.7 33.3 1.0
C K:GLN82 4.8 45.9 1.0
CB K:ILE84 4.8 50.2 1.0
N K:LYS85 4.9 47.8 1.0

Reference:

B.Wei, T.Zhang, P.Wang, Y.Pan, J.Li, W.Chen, M.Zhang, Q.Ji, W.Wu, L.Lan, J.Gan, C.G.Yang. Anti-Infective Therapy Using Species-Specific Activators of Staphylococcus Aureus Clpp. Nat Commun V. 13 6909 2022.
ISSN: ESSN 2041-1723
PubMed: 36376309
DOI: 10.1038/S41467-022-34753-0
Page generated: Thu Oct 3 12:12:33 2024

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