Magnesium in PDB 7xdv: Crystal Structure of A Receptor Like Kinase From Arabidopsis

All present enzymatic activity of Crystal Structure of A Receptor Like Kinase From Arabidopsis:
2.7.11.1;

The structure of Crystal Structure of A Receptor Like Kinase From Arabidopsis, PDB code: 7xdv was solved by Y.Q.Kong, Z.H.Ming, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.06 / 1.97
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.95, 83.33, 62.05, 90, 93.39, 90
R / Rfree (%)	17.1 / 21.3

The binding sites of Magnesium atom in the Crystal Structure of A Receptor Like Kinase From Arabidopsis (pdb code 7xdv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Receptor Like Kinase From Arabidopsis, PDB code: 7xdv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Receptor Like Kinase From Arabidopsis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Receptor Like Kinase From Arabidopsis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:57.0 occ:1.00 OD1 A:ASN171 2.2 36.0 1.0 OD2 A:ASP184 2.2 55.5 1.0 O2G A:ATP401 2.8 128.2 1.0 O3A A:ATP401 2.8 118.7 1.0 O1A A:ATP401 3.2 120.5 1.0 CG A:ASP184 3.2 56.4 1.0 CG A:ASN171 3.3 34.3 1.0 PG A:ATP401 3.5 133.4 1.0 O3G A:ATP401 3.5 136.0 1.0 O1B A:ATP401 3.6 123.0 1.0 PB A:ATP401 3.6 124.7 1.0 O3B A:ATP401 3.6 127.8 1.0 PA A:ATP401 3.6 114.5 1.0 O A:HOH507 3.7 55.3 1.0 O A:THR170 3.8 34.8 1.0 OD1 A:ASP184 3.9 63.6 1.0 ND2 A:ASN171 3.9 32.4 1.0 CB A:ASP184 4.2 44.3 1.0 OG1 A:THR170 4.3 34.0 1.0 C A:THR170 4.3 30.7 1.0 O5' A:ATP401 4.4 98.3 1.0 CB A:THR170 4.5 28.2 1.0 CB A:ASN171 4.6 26.5 1.0 CA A:ASN171 4.6 29.3 1.0 CE A:LYS168 4.7 36.3 1.0 N A:ASN171 4.7 27.7 1.0 O2A A:ATP401 4.9 116.3 1.0 O1G A:ATP401 4.9 133.0 1.0 O2B A:ATP401 5.0 127.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Receptor Like Kinase From Arabidopsis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Receptor Like Kinase From Arabidopsis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:55.8 occ:1.00 OD2 B:ASP184 2.1 65.4 1.0 O2G B:ATP401 2.2 87.5 1.0 OD1 B:ASN171 2.2 33.8 1.0 O1A B:ATP401 2.8 113.4 1.0 O3A B:ATP401 2.8 113.9 1.0 O B:HOH503 2.8 59.5 1.0 CG B:ASP184 3.1 63.7 1.0 PA B:ATP401 3.3 110.4 1.0 CG B:ASN171 3.4 32.4 1.0 PG B:ATP401 3.5 109.9 1.0 OD1 B:ASP184 3.8 68.1 1.0 O B:THR170 3.8 32.8 1.0 PB B:ATP401 3.8 118.6 1.0 O3B B:ATP401 3.9 118.2 1.0 O3G B:ATP401 3.9 116.0 1.0 O5' B:ATP401 3.9 91.5 1.0 ND2 B:ASN171 3.9 29.2 1.0 CB B:ASP184 4.0 50.1 1.0 O1B B:ATP401 4.1 118.4 1.0 C B:THR170 4.4 32.4 1.0 OG1 B:THR170 4.4 37.7 1.0 CB B:ASN171 4.6 23.6 1.0 CA B:ASN171 4.6 27.6 1.0 CB B:THR170 4.6 35.8 1.0 O2A B:ATP401 4.7 110.8 1.0 O1G B:ATP401 4.7 103.1 1.0 N B:ASN171 4.7 31.0 1.0

Y.Q.Kong, J.Chen, H.Chen, Y.N.Shen, L.F.Wang, Y.J.Yan, H.P.Zheng, F.Yu, Z.H.Ming. The Structural and Biochemical Basis For Fer Receptor Kinase Early Signaling Initiation in Arabidopsis To Be Published.