Magnesium in PDB 7xdy: Crystal Structure of A Receptor Like Kinase From Arabidopsis

All present enzymatic activity of Crystal Structure of A Receptor Like Kinase From Arabidopsis:
2.7.11.1;

The structure of Crystal Structure of A Receptor Like Kinase From Arabidopsis, PDB code: 7xdy was solved by Y.Q.Kong, Z.H.Ming, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.71 / 2.28
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.795, 83.248, 62.322, 90, 93.04, 90
R / Rfree (%)	19.7 / 24.7

The binding sites of Magnesium atom in the Crystal Structure of A Receptor Like Kinase From Arabidopsis (pdb code 7xdy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Receptor Like Kinase From Arabidopsis, PDB code: 7xdy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Receptor Like Kinase From Arabidopsis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Receptor Like Kinase From Arabidopsis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:30.0 occ:1.00 O2B A:ADP901 1.4 146.8 1.0 O A:HOH1001 1.7 30.0 1.0 OD2 A:ASP679 1.8 77.5 1.0 O A:HOH1002 1.8 30.0 1.0 OD1 A:ASN666 2.2 53.4 1.0 O2A A:ADP901 2.3 115.6 1.0 CG A:ASP679 2.4 71.7 1.0 OD1 A:ASP679 2.6 79.2 1.0 PB A:ADP901 2.8 141.1 1.0 PA A:ADP901 3.4 119.5 1.0 O3A A:ADP901 3.4 135.8 1.0 CG A:ASN666 3.4 46.6 1.0 CB A:ASP679 3.7 53.5 1.0 O3B A:ADP901 3.7 134.2 1.0 O1B A:ADP901 3.8 139.6 1.0 O A:THR665 4.0 40.1 1.0 O5' A:ADP901 4.0 115.5 1.0 ND2 A:ASN666 4.1 44.6 1.0 CA A:ASN666 4.6 38.2 1.0 CB A:ASN666 4.6 40.8 1.0 C A:THR665 4.7 39.3 1.0 O1A A:ADP901 4.7 104.2 1.0 OG A:SER678 4.9 51.7 1.0 N A:ASN666 4.9 38.0 1.0 CA A:ASP679 4.9 47.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Receptor Like Kinase From Arabidopsis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Receptor Like Kinase From Arabidopsis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg902 b:30.0 occ:1.00 OD1 B:ASP679 1.9 64.3 1.0 O B:HOH1002 2.1 30.0 1.0 O B:HOH1004 2.1 30.0 1.0 O2B B:ADP901 2.2 139.6 1.0 CG B:ASP679 2.4 63.7 1.0 OD2 B:ASP679 2.6 67.9 1.0 OD1 B:ASN666 2.8 45.5 1.0 O2A B:ADP901 3.0 111.1 1.0 PB B:ADP901 3.5 141.1 1.0 CB B:ASP679 3.7 47.0 1.0 PA B:ADP901 3.8 119.5 1.0 O3A B:ADP901 3.9 135.8 1.0 CG B:ASN666 4.0 39.8 1.0 O3B B:ADP901 4.0 146.8 1.0 O1A B:ADP901 4.2 115.6 1.0 O B:THR665 4.5 40.6 1.0 ND2 B:ASN666 4.6 39.3 1.0 O1B B:ADP901 4.8 134.2 1.0 NZ B:LYS565 4.8 79.6 1.0 OG B:SER678 4.9 45.3 1.0 CA B:ASP679 5.0 49.1 1.0 CA B:ASN666 5.0 37.1 1.0

Y.Q.Kong, J.Chen, H.Chen, Y.N.Shen, L.F.Wang, Y.J.Yan, H.P.Zheng, F.Yu, Z.H.Ming. The Structural and Biochemical Basis For Fer Receptor Kinase Early Signaling Initiation in Arabidopsis To Be Published.