Magnesium in PDB 7xht: Structure of the Ogeuiscb-Omega Rna-Target Dna Complex

The binding sites of Magnesium atom in the Structure of the Ogeuiscb-Omega Rna-Target Dna Complex (pdb code 7xht). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the Ogeuiscb-Omega Rna-Target Dna Complex, PDB code: 7xht:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of the Ogeuiscb-Omega Rna-Target Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Ogeuiscb-Omega Rna-Target Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:7.4 occ:1.00 N7 B:G46 2.4 8.4 1.0 C8 B:G46 3.1 4.1 1.0 OP2 B:A45 3.5 8.7 1.0 C5 B:G46 3.5 4.1 1.0 O6 B:G46 3.9 11.9 1.0 C6 B:G46 4.1 4.8 1.0 N9 B:G46 4.4 11.4 1.0 N1 B:A153 4.4 5.5 1.0 OP2 B:G46 4.5 4.2 1.0 NZ A:LYS109 4.6 11.0 1.0 C4 B:G46 4.6 4.7 1.0 C2 B:A153 4.7 5.1 1.0 OP1 B:C44 4.8 9.4 1.0 P B:A45 4.8 5.4 1.0

Magnesium binding site 2 out of 2 in the Structure of the Ogeuiscb-Omega Rna-Target Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Ogeuiscb-Omega Rna-Target Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:31.1 occ:1.00 OD1 A:ASP61 2.0 36.8 1.0 OE1 A:GLU193 2.5 33.8 1.0 CG A:ASP61 3.0 30.8 1.0 OD2 A:ASP61 3.3 34.5 1.0 CD A:GLU193 3.7 33.2 1.0 OD1 A:ASN195 3.7 46.1 1.0 O A:PRO62 4.2 32.3 1.0 CB A:ASP61 4.4 22.0 1.0 CD A:PRO62 4.4 24.4 1.0 OE2 A:GLU193 4.4 38.9 1.0 N A:PRO62 4.6 31.0 1.0 CA A:ASP61 4.7 21.6 1.0 CG A:ASN195 4.7 43.3 1.0 C A:ASP61 4.7 29.4 1.0 CG A:GLU193 4.8 30.0 1.0 ND2 A:ASN195 4.9 44.3 1.0

K.Kato, S.Okazaki, S.Kannan, H.Altae-Tran, F.Esra Demircioglu, Y.Isayama, J.Ishikawa, M.Fukuda, R.K.Macrae, T.Nishizawa, K.S.Makarova, E.V.Koonin, F.Zhang, H.Nishimasu. Structure of the Iscb-Omega Rna Ribonucleoprotein Complex, the Likely Ancestor of Crispr-CAS9. Nat Commun V. 13 6719 2022.
ISSN: ESSN 2041-1723
PubMed: 36344504
DOI: 10.1038/S41467-022-34378-3